Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   FAZ30_RS08525 Genome accession   NZ_CP039731
Coordinates   1829045..1829398 (+) Length   117 a.a.
NCBI ID   WP_124645432.1    Uniprot ID   -
Organism   Aquitalea aquatilis strain THG-DN7.12     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824045..1834398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ30_RS08505 purB 1824304..1825674 (-) 1371 WP_124645428.1 adenylosuccinate lyase -
  FAZ30_RS08510 - 1825671..1826648 (-) 978 WP_124645429.1 hypothetical protein -
  FAZ30_RS08515 ffh 1826696..1828051 (-) 1356 WP_137009271.1 signal recognition particle protein -
  FAZ30_RS08520 ccsA 1828160..1828981 (+) 822 WP_124645431.1 cytochrome c biogenesis protein CcsA -
  FAZ30_RS08525 comE 1829045..1829398 (+) 354 WP_124645432.1 ComEA family DNA-binding protein Machinery gene
  FAZ30_RS08530 - 1829447..1830847 (-) 1401 WP_124645433.1 deoxyribodipyrimidine photo-lyase -
  FAZ30_RS08535 - 1831189..1832262 (+) 1074 WP_124645434.1 porin -
  FAZ30_RS08540 pilF 1832496..1834190 (+) 1695 WP_205676668.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12032.17 Da        Isoelectric Point: 10.8123

>NTDB_id=360542 FAZ30_RS08525 WP_124645432.1 1829045..1829398(+) (comE) [Aquitalea aquatilis strain THG-DN7.12]
MKKLFAMIFGLLFICASAFAAVNINTATQQQLESLNGIGPVKAKAIVDYRTKNGAFKSVDDLKKVSGIGDKTLEKLRKDI
AVSGSSTVPAAAPAKAAAPAGKAVAGKKEASKPAAKK

Nucleotide


Download         Length: 354 bp        

>NTDB_id=360542 FAZ30_RS08525 WP_124645432.1 1829045..1829398(+) (comE) [Aquitalea aquatilis strain THG-DN7.12]
ATGAAAAAACTGTTTGCCATGATTTTTGGCCTGTTGTTTATCTGCGCTTCTGCCTTTGCTGCAGTCAATATCAACACGGC
AACTCAGCAACAGCTGGAGTCGCTTAATGGTATCGGGCCAGTCAAAGCCAAGGCGATCGTCGACTACCGCACCAAGAACG
GTGCCTTCAAGTCGGTGGATGACTTGAAGAAGGTGTCTGGTATCGGCGACAAGACGCTGGAAAAGCTGCGTAAGGATATT
GCCGTTAGTGGGAGCAGCACCGTACCGGCAGCAGCGCCAGCCAAGGCGGCTGCACCAGCAGGCAAGGCTGTAGCAGGTAA
GAAAGAAGCCTCCAAACCAGCGGCAAAGAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.882

87.179

0.487
  comE Neisseria gonorrhoeae MS11

55.882

87.179

0.487
  comE Neisseria gonorrhoeae MS11

55.882

87.179

0.487
  comE Neisseria gonorrhoeae MS11

55.882

87.179

0.487
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.831

70.94

0.41
  comEA/comE1 Glaesserella parasuis strain SC1401

40.708

96.581

0.393

Multiple sequence alignment