Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FAZ90_RS15000 Genome accession   NZ_CP039700
Coordinates   3305123..3306646 (-) Length   507 a.a.
NCBI ID   WP_016767536.1    Uniprot ID   A0A7Z1S2S1
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3300123..3311646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS14975 (FAZ90_14975) - 3300177..3300440 (+) 264 WP_010433308.1 YihD family protein -
  FAZ90_RS14980 (FAZ90_14980) ccoG 3300768..3302186 (+) 1419 WP_016767534.1 cytochrome c oxidase accessory protein CcoG -
  FAZ90_RS14985 (FAZ90_14985) - 3302261..3303247 (+) 987 WP_010433301.1 serine/threonine protein kinase -
  FAZ90_RS14990 (FAZ90_14990) - 3303303..3303902 (+) 600 WP_010433299.1 thiol:disulfide interchange protein DsbA/DsbL -
  FAZ90_RS14995 (FAZ90_14995) - 3304042..3304995 (+) 954 WP_010433296.1 DUF2860 domain-containing protein -
  FAZ90_RS15000 (FAZ90_15000) comM 3305123..3306646 (-) 1524 WP_016767536.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FAZ90_RS15005 (FAZ90_15005) ilvG 3307118..3308764 (+) 1647 WP_010433260.1 acetolactate synthase 2 catalytic subunit -
  FAZ90_RS15010 (FAZ90_15010) ilvM 3308766..3309050 (+) 285 WP_010433257.1 acetolactate synthase 2 small subunit -
  FAZ90_RS15015 (FAZ90_15015) - 3309063..3310031 (+) 969 WP_010433254.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55621.83 Da        Isoelectric Point: 8.1981

>NTDB_id=360196 FAZ90_RS15000 WP_016767536.1 3305123..3306646(-) (comM) [Vibrio cyclitrophicus strain ECSMB14105]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADRVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSN
EEAMETASIASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=360196 FAZ90_RS15000 WP_016767536.1 3305123..3306646(-) (comM) [Vibrio cyclitrophicus strain ECSMB14105]
ATGGGACTCGCGATAATTCATAGTCGAGCTAGTGTGGGTGTAGAGGCTCCAGAAGTGACAGTCGAGGTGCATATCAGCAA
TGGAATGCCCGGTTTTACGTTGGTGGGTTTACCTGAAACAACGGTCAAGGAATCTAAAGATCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTTAACTTAGCTCCCGCAGATTTACCGAAAGAAGGTGGGCGG
TTTGACTTGCCTATCGCGCTTGGGATTTTAGTTGCGTCGGACCAGTTACCCACATCAAAAATAGCTCAACATGAATTTAT
TGGTGAGTTAGCGCTGTCGGGTGAGTTGCGCTCGGTGAAAGGGGTACTGCCTGCAACACTCGCTGCTGACAGAGTTGAGC
GTTGCTTAGTCGTACCGCATCACAATGGCGATCAGGCTGCTTTAGTCGGTAAAGGGGCACATAAGTCGGCGCAAACCTTG
TTGGAGGTTTGTGCAGATATGTGTGGTCAGGCTCAGCTTGGTCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAGCAGCAAGGCAAGCGAGCATTAGAAATAGCTGCTGCTGGTAACCATAATT
TATTGTTCCTCGGCCCGCCTGGAACTGGCAAAACGATGTTGGCCTCGCGACTACGCGATTTATTGCCTGAGATGAGTAAC
GAAGAAGCGATGGAAACGGCTTCGATCGCTTCTTTAACTCAACAAGAGATCAATCAATACAACTGGAAGCAACGACCTTT
TCGGTCCCCCCATCATTCGAGCTCAATGGCAGCATTGGTGGGGGGTGGTTCGGTGCCTCGCCCTGGTGAGATATCTTTGG
CGCATAACGGGTTATTGTTTCTTGATGAGATGCCTGAGTTTGAGCGCAAGGTACTCGATTCTTTGCGAGAGCCGTTGGAG
TCGGGTGAAATCATTATCTCTCGTGCGGCAGGTAAGACGCGTTTTCCTGCGCGCTTTCAATTAGTCGGTGCACTTAACCC
AAGCCCTACAGGTTATTATGAAGGCAATCAAGCTCGAGCGAACCCACAAATCATCCTTCGCTACCTCAATCGACTATCAG
GGCCGTTATTGGACCGATTCGATATGTCGTTAGAGATCCCCCTGTTGCCCAAAGGGATGTTAGCCGAAGGTGGCGACCGT
GGTGAAACGACTCAAGTCGTAAAGCAAAGGGTCAGGCAGGCTCGTGAGCTGATGCTATCTCGCAATCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAAAAGTATTGCCCGTTAAGACGTGAGGATGCGGAGTTTCTGGAAACGGCATTGCACC
GATTGGGCTTATCGATTCGCGCTTACCACCGGATCATCAAGGTGGCGCGAACCATTGCTGACCTTGACGGTAATGAGCAG
ATTGAAAAGAAGCACCTATCGGAAGCGCTTGGCTATCGAGCCATGGATCGGTTGTTGAAGCAACTCACAGCTCAAGCTGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1S2S1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

84.024

100

0.84
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

64.892

100

0.649
  comM Glaesserella parasuis strain SC1401

62.745

100

0.631
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426

Multiple sequence alignment