Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   I33_RS13110 Genome accession   NC_017195
Coordinates   2635395..2636399 (-) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2630395..2641399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS13080 (I33_2814) yrbG 2631369..2632025 (-) 657 WP_014477527.1 DUF421 domain-containing protein -
  I33_RS13085 (I33_2815) - 2632222..2632611 (+) 390 WP_014477528.1 TIGR04086 family membrane protein -
  I33_RS13090 (I33_2816) yajC 2632668..2632934 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  I33_RS13095 (I33_2817) tgt 2632972..2634117 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  I33_RS13100 (I33_2818) queA 2634144..2635172 (-) 1029 WP_014477530.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  I33_RS13105 (I33_2819) yrzS 2635202..2635402 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  I33_RS13110 (I33_2820) ruvB 2635395..2636399 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  I33_RS13115 (I33_2821) ruvA 2636410..2637015 (-) 606 WP_014477531.1 Holliday junction branch migration protein RuvA Machinery gene
  I33_RS13120 (I33_2822) bofC 2637154..2637666 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  I33_RS13125 (I33_2823) csbX 2637714..2639021 (-) 1308 WP_014477532.1 MFS transporter -
  I33_RS13130 (I33_2824) iolG 2639092..2640117 (-) 1026 WP_014477533.1 inositol 2-dehydrogenase -
  I33_RS13135 (I33_2825) yrzF 2640354..2641001 (+) 648 WP_014477534.1 phosphotransferase -
  I33_RS21040 (I33_2826) - 2641046..2641168 (-) 123 WP_014477535.1 hypothetical protein -
  I33_RS21385 - 2641253..2641327 (+) 75 Protein_2649 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=36015 I33_RS13110 WP_003229718.1 2635395..2636399(-) (ruvB) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=36015 I33_RS13110 WP_003229718.1 2635395..2636399(-) (ruvB) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCCATTGTAGCCAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCTGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGGCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGCCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTCATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTAGAGATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCACAAGTGCTGGGTGACAGCAGGATC
ACTGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAATGGCGGCCCAGTAGGCCTTGATACGATATCAGCTACGATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTTCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518

Multiple sequence alignment