Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VB87_RS02230 Genome accession   NC_013722
Coordinates   400322..401878 (-) Length   518 a.a.
NCBI ID   WP_012914917.1    Uniprot ID   D2UB16
Organism   Xanthomonas albilineans GPE PC73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 395322..406878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB87_RS02205 (XALC_0354) bioB 395925..396968 (-) 1044 WP_012914913.1 biotin synthase BioB -
  VB87_RS02210 (XALC_0355) - 397018..397749 (+) 732 WP_012914914.1 ComF family protein -
  VB87_RS02215 (XALC_0356) ubiA 397898..398800 (-) 903 WP_012914915.1 4-hydroxybenzoate octaprenyltransferase -
  VB87_RS02225 (XALC_0358) - 399400..400248 (+) 849 WP_045756688.1 alpha/beta fold hydrolase -
  VB87_RS02230 (XALC_0359) comM 400322..401878 (-) 1557 WP_012914917.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VB87_RS02235 (XALC_0360) - 401891..402160 (-) 270 WP_012914918.1 accessory factor UbiK family protein -
  VB87_RS02240 (XALC_0361) - 402336..402674 (+) 339 WP_012914919.1 P-II family nitrogen regulator -
  VB87_RS02245 (XALC_0362) speE 402713..403564 (-) 852 WP_012914920.1 polyamine aminopropyltransferase -
  VB87_RS02250 (XALC_0363) speA 403803..405692 (+) 1890 WP_012914921.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 518 a.a.        Molecular weight: 55558.46 Da        Isoelectric Point: 8.4168

>NTDB_id=35972 VB87_RS02230 WP_012914917.1 400322..401878(-) (comM) [Xanthomonas albilineans GPE PC73]
MSLALVHSRARAGVLAPPVRVEVHLSGGLPATQIVGLPEAAVRESRDRVRAAILCAQYAFPARRITVNLAPADLPKEGGR
FDLPIALGILAAAGQLDPQAMEQYEFLGELALTGELRPVDGVLAAALAAAHAGRTLIVPADNGAEAALAQHVRAFTARTL
LEVCGLLNGSKTLPVAEALPAAALPFPDLSDVRGQAQARRALEIAAAGHHHLLLIGSPGCGKTLLASRLPGILPEASEAE
ALESAAIASVSGRGLDPARWRQRPYRSPHHTASAVSLVGGGTHPRPGEISLAHNGVLFLDELPEWNRHALEVLREPLESG
QVTVSRAARSAEFPARFQLVAAMNPYPCGWAGDPSGRCRCNEDSIRRYRARISGPLLDRIDLHVEVPRLPPQALRADATT
SEPSVAVRARVEQARQRQLMRAARPNGQLDHYQTMRDCRLQPHDEALLEHAIDRLRLSARSLHRILRVARTIADLDGSDA
IATPHLTEAIAYRQLDRGEAITPGAESTPRGALRRNPE

Nucleotide


Download         Length: 1557 bp        

>NTDB_id=35972 VB87_RS02230 WP_012914917.1 400322..401878(-) (comM) [Xanthomonas albilineans GPE PC73]
ATGAGCCTGGCGCTGGTGCACAGCCGTGCCCGCGCGGGGGTGCTTGCGCCTCCGGTTCGGGTCGAAGTCCATCTATCCGG
CGGCCTGCCGGCGACGCAGATCGTCGGCCTGCCCGAAGCCGCAGTGCGCGAATCGCGCGACCGCGTGCGCGCCGCCATTC
TGTGCGCGCAGTACGCGTTCCCGGCGCGGCGGATCACCGTCAACCTGGCACCGGCCGACCTACCCAAAGAGGGCGGCCGC
TTCGACCTCCCGATCGCACTGGGCATCCTTGCCGCCGCCGGCCAACTCGATCCACAGGCAATGGAGCAATACGAATTCCT
CGGCGAACTGGCACTCACCGGCGAACTGCGTCCGGTCGATGGCGTATTGGCGGCCGCGCTGGCCGCTGCGCATGCTGGAC
GCACGTTGATCGTGCCCGCGGACAACGGCGCTGAAGCGGCACTTGCGCAACACGTGCGCGCATTCACCGCACGCACCCTA
CTCGAGGTCTGCGGACTGTTGAACGGCAGCAAGACCCTGCCCGTAGCCGAAGCACTACCCGCCGCCGCCCTGCCCTTCCC
CGACCTGAGCGATGTGCGCGGTCAGGCGCAAGCGCGGCGCGCACTGGAGATCGCCGCCGCAGGACATCACCATCTGCTAC
TGATCGGCAGCCCAGGCTGCGGTAAAACCCTGTTGGCCTCGCGCCTGCCCGGGATCCTCCCCGAGGCCAGCGAGGCCGAA
GCGCTGGAAAGCGCGGCCATCGCATCGGTCAGTGGCCGCGGCCTGGATCCGGCCCGCTGGCGGCAGCGTCCATATCGGTC
GCCGCACCATACTGCCAGCGCGGTATCGCTGGTCGGTGGCGGCACGCATCCGCGCCCGGGCGAAATCTCGCTGGCGCACA
ACGGCGTGCTGTTCTTGGACGAATTGCCCGAGTGGAACCGGCATGCACTGGAAGTGCTGCGCGAGCCTCTCGAATCGGGC
CAGGTCACCGTATCACGCGCAGCGCGCAGTGCCGAATTCCCCGCGCGCTTCCAACTGGTGGCGGCAATGAATCCCTACCC
TTGCGGCTGGGCCGGTGACCCCAGCGGCCGCTGCCGCTGCAACGAGGACAGCATACGCCGCTATCGCGCACGCATCTCCG
GGCCCTTGCTAGATCGCATCGATCTGCACGTGGAAGTGCCTCGCTTGCCACCGCAGGCGCTGCGCGCCGATGCCACGACG
AGCGAACCCAGCGTCGCCGTGCGCGCCCGTGTGGAGCAGGCGCGGCAACGACAACTGATGCGTGCCGCGCGGCCCAACGG
CCAGCTCGACCACTACCAGACCATGCGCGACTGCCGCCTGCAACCGCACGACGAAGCACTCCTGGAACACGCGATCGATC
GCTTGCGACTGTCGGCGCGCTCGCTGCACCGCATCCTGCGCGTGGCCCGCACCATCGCCGACCTGGATGGCAGCGATGCC
ATCGCCACCCCACATCTCACCGAGGCCATCGCCTACCGGCAACTGGATCGTGGCGAGGCAATCACGCCGGGTGCGGAATC
CACGCCGCGCGGCGCCCTGCGGCGTAACCCCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2UB16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

96.332

0.533
  comM Haemophilus influenzae Rd KW20

53.571

97.297

0.521
  comM Vibrio campbellii strain DS40M4

53.307

96.332

0.514
  comM Glaesserella parasuis strain SC1401

51.984

97.297

0.506
  comM Legionella pneumophila str. Paris

49.603

97.297

0.483
  comM Legionella pneumophila strain ERS1305867

49.603

97.297

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

98.069

0.438

Multiple sequence alignment