Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E8E00_RS13650 Genome accession   NZ_CP039516
Coordinates   2917853..2919376 (-) Length   507 a.a.
NCBI ID   WP_096630329.1    Uniprot ID   -
Organism   Salinivibrio sp. YCSC6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2912853..2924376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E00_RS13625 (E8E00_13625) - 2913042..2914073 (+) 1032 WP_096630336.1 GGDEF domain-containing protein -
  E8E00_RS13630 (E8E00_13630) - 2914168..2914434 (+) 267 WP_077458097.1 YihD family protein -
  E8E00_RS13635 (E8E00_13635) ccoG 2914623..2916050 (+) 1428 WP_096630334.1 cytochrome c oxidase accessory protein CcoG -
  E8E00_RS13640 (E8E00_13640) - 2916141..2917121 (+) 981 WP_096630331.1 serine/threonine protein kinase -
  E8E00_RS13645 (E8E00_13645) - 2917151..2917852 (+) 702 WP_240531914.1 thiol:disulfide interchange protein DsbA/DsbL -
  E8E00_RS13650 (E8E00_13650) comM 2917853..2919376 (-) 1524 WP_096630329.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E8E00_RS13655 (E8E00_13655) ilvG 2919860..2921506 (+) 1647 WP_096630327.1 acetolactate synthase 2 catalytic subunit -
  E8E00_RS13660 (E8E00_13660) ilvM 2921506..2921763 (+) 258 WP_069588069.1 acetolactate synthase 2 small subunit -
  E8E00_RS13665 (E8E00_13665) ilvE 2921778..2922719 (+) 942 WP_069588071.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54644.64 Da        Isoelectric Point: 8.2962

>NTDB_id=359456 E8E00_RS13650 WP_096630329.1 2917853..2919376(-) (comM) [Salinivibrio sp. YCSC6]
MALAIVHSRACVGVEAPNVTVEVHISNGLPGFALVGLPETTVKEARDRVRSAIVTSNFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILVASGQIPAKRLHEFEFLGELALSGQLRPVKGALPAALASQKAQRALVVPDDNASQVALVDSERHVSAPDL
IAVCQHLAGQQSLQLNATPHSDTTPAPTRCLRDIIGQQQGKRALEIAASGSHNLLFVGPPGTGKTMLASRLCDLLPPMND
EEALASAAVTSLTQQPLHEGNWRQRPFRSPHHSSSMAALVGGGTVPRPGEISLAHQGVLFLDEMPEFERRVLDALREPLE
SGEIIISRANGKTRFPARFQLIGALNPSPTGHHEGELARSNPQQVLRYLARLSGPLLDRFDMSIEIPALPRGMLSSGGDR
GESTAKVRERVACARARMLARQGKVNALLSNREMEEYCQLAQADAAFLEQALHRLGLSVRAYHRIIKVARTIADLAEAEA
ISRPHLAEALGYRAMDGLLRHLNAQVS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=359456 E8E00_RS13650 WP_096630329.1 2917853..2919376(-) (comM) [Salinivibrio sp. YCSC6]
ATGGCGCTAGCGATTGTGCATAGCCGAGCGTGTGTCGGGGTAGAGGCTCCCAATGTGACGGTTGAAGTCCACATTTCCAA
TGGATTGCCCGGGTTTGCGCTGGTGGGGTTACCGGAAACCACGGTCAAAGAAGCGCGCGATCGGGTCAGAAGTGCCATTG
TGACCTCCAATTTTGAATTCCCATCACGGCGTATTACTGTCAATTTAGCACCGGCGGATTTACCGAAAGAAGGAGGGCGT
TTTGATTTGCCTATCGCGCTTGGCATTTTGGTCGCCTCTGGGCAAATTCCAGCGAAACGGCTGCATGAATTTGAGTTTCT
CGGTGAGCTGGCGTTATCCGGGCAGTTGCGCCCCGTCAAAGGGGCATTACCAGCTGCACTTGCCAGCCAAAAAGCGCAGC
GTGCGCTCGTGGTTCCTGATGATAACGCTAGCCAAGTGGCGTTGGTGGACAGCGAGCGCCACGTGTCAGCGCCTGATTTA
ATCGCAGTGTGTCAGCACCTAGCTGGTCAACAGAGTTTGCAGCTTAACGCGACACCACATAGTGATACGACGCCGGCGCC
AACCCGCTGCTTACGTGACATCATCGGCCAACAGCAAGGCAAACGCGCGTTAGAAATCGCCGCCAGTGGTTCACATAACT
TGTTGTTTGTTGGACCGCCGGGAACAGGAAAAACCATGTTAGCGTCGCGCTTGTGCGACTTGCTTCCTCCCATGAACGAC
GAAGAAGCGTTAGCTTCCGCCGCGGTCACGTCATTAACCCAGCAACCTTTGCATGAGGGAAACTGGCGTCAGCGACCGTT
TCGCAGTCCTCATCACTCCAGCTCTATGGCGGCGCTGGTCGGGGGCGGAACGGTCCCGCGTCCCGGGGAGATCTCATTGG
CGCACCAAGGGGTGCTGTTTTTGGATGAAATGCCAGAATTTGAGCGTCGTGTGCTCGATGCGCTTCGCGAGCCGCTGGAG
TCGGGGGAAATTATTATCTCGCGTGCTAACGGTAAAACCCGTTTTCCCGCCCGTTTTCAGTTGATTGGTGCATTAAACCC
GAGCCCGACAGGCCATCATGAAGGCGAGTTGGCGCGCTCTAATCCACAGCAAGTGTTGCGCTATTTGGCGCGTTTATCTG
GCCCTTTGCTGGATAGGTTTGATATGTCAATTGAGATCCCGGCATTGCCGCGCGGGATGCTATCGAGCGGTGGCGACCGT
GGTGAATCAACCGCAAAGGTACGGGAAAGAGTTGCGTGTGCCCGTGCGCGTATGTTGGCGAGACAAGGGAAAGTGAATGC
GTTACTCAGCAATCGCGAAATGGAGGAATATTGTCAGCTTGCGCAGGCGGATGCCGCATTTCTCGAACAGGCATTGCATC
GATTAGGACTGTCTGTGCGGGCATACCATAGGATCATTAAAGTGGCGAGGACGATTGCCGATCTGGCCGAAGCGGAGGCG
ATAAGCCGCCCTCACCTTGCTGAGGCCTTAGGGTATCGGGCGATGGATGGCTTACTTCGCCATCTCAACGCCCAAGTCAG
TTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

74.455

99.606

0.742
  comM Vibrio campbellii strain DS40M4

73.861

99.606

0.736
  comM Glaesserella parasuis strain SC1401

63.261

100

0.635
  comM Haemophilus influenzae Rd KW20

63.116

100

0.631
  comM Legionella pneumophila str. Paris

48.111

99.211

0.477
  comM Legionella pneumophila strain ERS1305867

48.111

99.211

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.42

100

0.414

Multiple sequence alignment