Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GSY65_RS26920 Genome accession   NZ_CP047318
Coordinates   6262738..6264360 (+) Length   540 a.a.
NCBI ID   WP_159773471.1    Uniprot ID   -
Organism   Streptomyces sp. HM190     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6257738..6269360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS26890 lepB 6258423..6259541 (+) 1119 WP_236580071.1 signal peptidase I -
  GSY65_RS26895 lepB 6259507..6260397 (+) 891 WP_236580074.1 signal peptidase I -
  GSY65_RS26900 lepB 6260479..6261222 (+) 744 WP_159773467.1 signal peptidase I -
  GSY65_RS26905 - 6261380..6261865 (+) 486 WP_236580257.1 NUDIX hydrolase -
  GSY65_RS26910 - 6261922..6262230 (+) 309 WP_005311352.1 DUF2469 domain-containing protein -
  GSY65_RS26915 - 6262373..6262738 (+) 366 WP_159773469.1 YraN family protein -
  GSY65_RS26920 comM 6262738..6264360 (+) 1623 WP_159773471.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GSY65_RS26925 dprA 6264395..6265555 (+) 1161 WP_159773473.1 DNA-processing protein DprA -
  GSY65_RS26930 whiG 6265828..6266664 (+) 837 WP_159773475.1 RNA polymerase sigma factor WhiG -
  GSY65_RS26935 - 6266806..6267363 (+) 558 WP_159776431.1 TetR/AcrR family transcriptional regulator -
  GSY65_RS26940 - 6267520..6268059 (-) 540 WP_159776432.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 56522.88 Da        Isoelectric Point: 6.5050

>NTDB_id=359153 GSY65_RS26920 WP_159773471.1 6262738..6264360(+) (comM) [Streptomyces sp. HM190]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESKDRVRAAVVNSGAEWPQKKLTVGLSPASVPKAGSG
FDMAVACAVLGASERIDPRVLSDIVMIGELGLDGRVRPVRGILPAVLAAAGAGYEQVVVPECSAAEASLVPGVSVLGVRT
LRQLIAVLADEPVPDEEPDEGRPDPLLAGLRMPGTGAATGMHTTGATQQDHGHDLADVVGQVAARTAVEVAAAGGHHLFL
EGPPGAGKTMLAERLPAILPELGREESLEVTAVHSIAGLLPAGKPLVDTAPYCAPHHSATMQALVGGGQGVARPGAVSLA
HRGVLFLDETPEFSSQVLDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSRTDDLCECPPASIRRYQARL
SGPLLDRVDLRVEVDRVTRSELTRRGARGESTATVADRVRAARERAALRLAGTPWRTNSEIPGRELRSRWHAAPGAMDEA
ERSLERGILTARGLDRVLRVAWTISDLMGHERPDVADVNLALQLRTGVPRGVPMAIGALA

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=359153 GSY65_RS26920 WP_159773471.1 6262738..6264360(+) (comM) [Streptomyces sp. HM190]
ATGGGGTTCGCCCGCACCTGCTCGGTGGCCCTCGTGGGCGTGGAGGGCGTCGTCGTCGAGGTCCAGGCGGACCTCGAACC
GGGCGTGGCCGCGTTCACGCTGGTGGGCCTGCCGGACAAGAGCCTGACGGAGAGCAAGGACCGGGTCAGGGCGGCGGTGG
TGAACTCCGGCGCCGAGTGGCCCCAGAAGAAGCTGACGGTGGGCCTCAGCCCCGCGTCGGTGCCCAAGGCGGGCAGCGGC
TTCGACATGGCGGTTGCCTGTGCCGTCCTCGGTGCCTCCGAGCGGATCGATCCGCGCGTGCTCTCCGACATCGTGATGAT
CGGGGAGCTGGGACTCGACGGGAGGGTCCGCCCGGTGCGGGGCATCCTGCCCGCCGTGCTGGCTGCCGCCGGGGCCGGAT
ACGAACAAGTGGTCGTGCCGGAGTGCTCCGCCGCGGAGGCGTCCCTGGTGCCCGGGGTTTCCGTACTGGGCGTTCGCACC
CTGCGTCAGCTGATCGCCGTCCTCGCCGACGAGCCCGTGCCGGACGAGGAGCCCGACGAGGGGCGCCCGGACCCCCTGCT
GGCGGGGCTGCGCATGCCGGGTACGGGTGCCGCCACCGGTATGCACACCACGGGCGCCACCCAGCAGGACCACGGGCACG
ACCTGGCCGACGTCGTCGGACAGGTCGCGGCGCGAACCGCGGTCGAGGTGGCGGCAGCGGGGGGACACCACCTCTTCCTG
GAAGGCCCACCGGGCGCGGGGAAGACGATGCTCGCGGAGCGGCTTCCGGCCATCCTGCCGGAACTCGGTCGGGAAGAGTC
CTTGGAGGTCACGGCCGTCCACTCGATCGCCGGTCTGCTGCCGGCGGGGAAGCCGCTGGTCGACACGGCGCCCTACTGCG
CGCCGCACCACTCCGCGACGATGCAGGCGCTCGTTGGAGGAGGCCAGGGCGTCGCACGGCCCGGCGCGGTGTCCTTGGCC
CATCGCGGGGTGCTCTTCCTCGACGAGACCCCCGAGTTCAGCAGTCAGGTGCTGGACGCCCTGCGCCAGCCGCTGGAGGC
GGGGCACGTCGTGATCGCGCGCAGCGCCGGGGTCGTACGGTTCCCGGCCAAGTTCCTCATGGTGCTCGCCGCCAATCCAT
GCCCGTGCGGGCGTTTCTCCCGGACCGACGACCTGTGTGAATGTCCGCCCGCCTCGATCCGCCGCTATCAGGCGCGGCTG
TCCGGACCGCTGCTGGACCGGGTCGATCTGCGTGTCGAGGTCGATCGGGTCACCCGGTCCGAGCTCACCCGGCGAGGCGC
CCGCGGCGAGTCCACGGCGACGGTGGCGGACCGGGTGCGCGCCGCGCGGGAACGAGCCGCCCTTCGGCTGGCCGGCACGC
CGTGGCGTACGAACAGCGAGATCCCCGGGCGTGAGCTGCGCAGCAGGTGGCATGCGGCGCCGGGCGCCATGGACGAGGCC
GAGCGGAGCCTGGAGAGGGGCATCCTCACCGCCCGTGGACTGGACCGGGTTCTGCGGGTCGCCTGGACGATCTCGGATCT
CATGGGCCACGAGCGTCCCGATGTGGCGGACGTCAACCTGGCTCTGCAACTGCGCACCGGCGTTCCGCGTGGGGTGCCCA
TGGCGATCGGAGCCCTGGCATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-421)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.773

97.778

0.389
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.307

96.481

0.389
  comM Vibrio cholerae strain A1552

40.307

96.481

0.389
  comM Acinetobacter baylyi ADP1

39.354

97.407

0.383
  comM Legionella pneumophila strain ERS1305867

38.041

98.333

0.374
  comM Legionella pneumophila str. Paris

38.041

98.333

0.374
  comM Glaesserella parasuis strain SC1401

37.524

97.222

0.365
  comM Haemophilus influenzae Rd KW20

38.281

94.815

0.363