Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   E8M06_RS02380 Genome accession   NZ_CP039462
Coordinates   477656..478321 (+) Length   221 a.a.
NCBI ID   WP_105156084.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472656..483321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS02355 (E8M06_02355) - 472868..474268 (+) 1401 WP_014637530.1 Cof-type HAD-IIB family hydrolase -
  E8M06_RS02360 (E8M06_02360) - 474270..474641 (+) 372 WP_136581112.1 S1 RNA-binding domain-containing protein -
  E8M06_RS02365 (E8M06_02365) cysK 474667..475592 (-) 926 Protein_425 cysteine synthase A -
  E8M06_RS02370 (E8M06_02370) - 475682..476314 (-) 633 WP_015646510.1 YigZ family protein -
  E8M06_RS02375 (E8M06_02375) comFA/cflA 476371..477663 (+) 1293 WP_136581113.1 DEAD/DEAH box helicase Machinery gene
  E8M06_RS02380 (E8M06_02380) comFC/cflB 477656..478321 (+) 666 WP_105156084.1 ComF family protein Machinery gene
  E8M06_RS02385 (E8M06_02385) raiA 478398..478940 (+) 543 WP_004194117.1 ribosome-associated translation inhibitor RaiA -
  E8M06_RS02390 (E8M06_02390) - 479016..480272 (-) 1257 WP_105179941.1 ISL3 family transposase -
  E8M06_RS11350 (E8M06_02395) - 480320..480634 (+) 315 WP_136581114.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25748.55 Da        Isoelectric Point: 8.2726

>NTDB_id=358840 E8M06_RS02380 WP_105156084.1 477656..478321(+) (comFC/cflB) [Streptococcus suis strain WUSS351]
MSNCLLCGQAMKNKIRFSDLIFFSKEKSGTCEECFSTFEEIAEQHCPHCYKNGESESCKDCQYWQNQGKPVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLDATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=358840 E8M06_RS02380 WP_105156084.1 477656..478321(+) (comFC/cflB) [Streptococcus suis strain WUSS351]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAATAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGCACCTGTGAAGAATGTTTTTCGACTTTTGAGGAAATAGCAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAACCAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCAAAAAAGCTTAG
AATAGCGTTAAGCCAATTTCCTGACTACACAATTGTTCCCATACCAATTAGTCAAAAACGACTATCAGAACGTGGGTTTA
ATCAAGTGGAAGGACTTTTGGATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCG
TCTAAAAATCGAGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCTACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484

Multiple sequence alignment