Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SB21_RS16960 Genome accession   NZ_CP039380
Coordinates   3401629..3402318 (-) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL-K103     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3396629..3407318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB21_RS16925 (SB21_16925) fliW 3396719..3397150 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  SB21_RS16930 (SB21_16930) - 3397180..3397749 (-) 570 WP_007407476.1 DUF6470 family protein -
  SB21_RS16935 (SB21_16935) flgL 3397841..3398758 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SB21_RS16940 (SB21_16940) flgK 3398770..3400287 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  SB21_RS16945 (SB21_16945) - 3400303..3400785 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SB21_RS16950 (SB21_16950) flgM 3400800..3401066 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB21_RS16955 (SB21_16955) - 3401136..3401555 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SB21_RS16960 (SB21_16960) comFC 3401629..3402318 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  SB21_RS16965 (SB21_16965) - 3402324..3402608 (-) 285 WP_007407481.1 competence protein ComFB -
  SB21_RS16970 (SB21_16970) comFA 3402666..3404051 (-) 1386 WP_039063725.1 DEAD/DEAH box helicase Machinery gene
  SB21_RS16975 (SB21_16975) - 3404159..3405007 (-) 849 WP_007407483.1 DegV family protein -
  SB21_RS16980 (SB21_16980) degU 3405105..3405794 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SB21_RS16985 (SB21_16985) degS 3405871..3407076 (-) 1206 WP_039063726.1 sensor histidine kinase Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=358368 SB21_RS16960 WP_198161198.1 3401629..3402318(-) (comFC) [Bacillus velezensis strain LPL-K103]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=358368 SB21_RS16960 WP_198161198.1 3401629..3402318(-) (comFC) [Bacillus velezensis strain LPL-K103]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTATTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGATAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment