Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   SB21_RS16980 Genome accession   NZ_CP039380
Coordinates   3405105..3405794 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain LPL-K103     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400105..3410794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB21_RS16945 (SB21_16945) - 3400303..3400785 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SB21_RS16950 (SB21_16950) flgM 3400800..3401066 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB21_RS16955 (SB21_16955) - 3401136..3401555 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SB21_RS16960 (SB21_16960) comFC 3401629..3402318 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  SB21_RS16965 (SB21_16965) - 3402324..3402608 (-) 285 WP_007407481.1 competence protein ComFB -
  SB21_RS16970 (SB21_16970) comFA 3402666..3404051 (-) 1386 WP_039063725.1 DEAD/DEAH box helicase Machinery gene
  SB21_RS16975 (SB21_16975) - 3404159..3405007 (-) 849 WP_007407483.1 DegV family protein -
  SB21_RS16980 (SB21_16980) degU 3405105..3405794 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SB21_RS16985 (SB21_16985) degS 3405871..3407076 (-) 1206 WP_039063726.1 sensor histidine kinase Regulator
  SB21_RS16990 (SB21_16990) - 3407299..3407946 (+) 648 WP_007407485.1 YigZ family protein -
  SB21_RS16995 (SB21_16995) - 3407951..3409171 (+) 1221 WP_039063727.1 LCP family protein -
  SB21_RS17000 (SB21_17000) - 3409270..3410346 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=358370 SB21_RS16980 WP_003219701.1 3405105..3405794(-) (degU) [Bacillus velezensis strain LPL-K103]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=358370 SB21_RS16980 WP_003219701.1 3405105..3405794(-) (degU) [Bacillus velezensis strain LPL-K103]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACTGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment