Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   SB21_RS16970 Genome accession   NZ_CP039380
Coordinates   3402666..3404051 (-) Length   461 a.a.
NCBI ID   WP_039063725.1    Uniprot ID   -
Organism   Bacillus velezensis strain LPL-K103     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3397666..3409051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB21_RS16935 (SB21_16935) flgL 3397841..3398758 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SB21_RS16940 (SB21_16940) flgK 3398770..3400287 (-) 1518 WP_039063717.1 flagellar hook-associated protein FlgK -
  SB21_RS16945 (SB21_16945) - 3400303..3400785 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SB21_RS16950 (SB21_16950) flgM 3400800..3401066 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB21_RS16955 (SB21_16955) - 3401136..3401555 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  SB21_RS16960 (SB21_16960) comFC 3401629..3402318 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  SB21_RS16965 (SB21_16965) - 3402324..3402608 (-) 285 WP_007407481.1 competence protein ComFB -
  SB21_RS16970 (SB21_16970) comFA 3402666..3404051 (-) 1386 WP_039063725.1 DEAD/DEAH box helicase Machinery gene
  SB21_RS16975 (SB21_16975) - 3404159..3405007 (-) 849 WP_007407483.1 DegV family protein -
  SB21_RS16980 (SB21_16980) degU 3405105..3405794 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SB21_RS16985 (SB21_16985) degS 3405871..3407076 (-) 1206 WP_039063726.1 sensor histidine kinase Regulator
  SB21_RS16990 (SB21_16990) - 3407299..3407946 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52607.97 Da        Isoelectric Point: 10.2709

>NTDB_id=358369 SB21_RS16970 WP_039063725.1 3402666..3404051(-) (comFA) [Bacillus velezensis strain LPL-K103]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVLIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKATDYFQKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=358369 SB21_RS16970 WP_039063725.1 3402666..3404051(-) (comFA) [Bacillus velezensis strain LPL-K103]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATTAAGCGTTTTATAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCTTGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGGCAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGAGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCAGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62

Multiple sequence alignment