Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DD586_RS19520 Genome accession   NC_013592
Coordinates   4477569..4479095 (+) Length   508 a.a.
NCBI ID   WP_012886520.1    Uniprot ID   D2BYU3
Organism   Dickeya parazeae Ech586     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4472569..4484095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD586_RS19500 (Dd586_3916) ilvE 4472738..4473664 (-) 927 WP_012886516.1 branched-chain-amino-acid transaminase -
  DD586_RS19505 (Dd586_3917) ilvM 4473688..4473945 (-) 258 WP_012886517.1 acetolactate synthase 2 small subunit -
  DD586_RS19510 (Dd586_3918) ilvG 4473981..4475627 (-) 1647 WP_012886518.1 acetolactate synthase 2 catalytic subunit -
  DD586_RS21600 ilvL 4475767..4475865 (-) 99 WP_071526243.1 ilv operon leader peptide -
  DD586_RS19515 (Dd586_3919) - 4475998..4477221 (-) 1224 WP_012886519.1 MFS transporter -
  DD586_RS19520 (Dd586_3920) comM 4477569..4479095 (+) 1527 WP_012886520.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DD586_RS19525 (Dd586_3921) - 4479158..4479496 (-) 339 WP_012886521.1 DUF413 domain-containing protein -
  DD586_RS19530 (Dd586_3922) hdfR 4479616..4480443 (+) 828 WP_012886522.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55533.12 Da        Isoelectric Point: 7.9065

>NTDB_id=35835 DD586_RS19520 WP_012886520.1 4477569..4479095(+) (comM) [Dickeya parazeae Ech586]
MTLAVTYTRATIGMQAPEVSIEVHISNGLPALTLVGLPETTVKEARDRVRSALINSGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIAGEKLAQYEFLGELGLSGSLRGVHGAIPAAMEAQKVGRGLILPEDNKLEMTLIPHGDTLLANHL
LQVCAFLQGETALLRGSEIPHTISPHTSAPDLKEIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLPGLLPELN
DDEALESAAINSLIDIQPGLLQWRKRPFRSPHHTASITALVGGGVLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIVISRTRAKVCYPARFQLVAAMNPSPSGHYQGIHNRMPAQQILRYLNRLSGPFLDRFDLSIEVPLLPPGILRQQTR
IGEDSATVRARVFDARKRQLDRVGRINAQMKSDDIASYCRLNHEDATYLEEVMSKLGLSVRAWHRILKVSRTIADLGGEE
QIRRAHLSEALSYRCMDRLLIQLHKSLA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=35835 DD586_RS19520 WP_012886520.1 4477569..4479095(+) (comM) [Dickeya parazeae Ech586]
ATGACATTGGCAGTGACCTATACGCGAGCAACCATCGGTATGCAGGCACCGGAAGTCTCAATCGAAGTACATATCAGCAA
TGGTTTACCGGCACTCACGCTGGTCGGTTTACCGGAAACAACGGTCAAAGAAGCACGAGACCGGGTACGCAGCGCGCTAA
TCAACAGCGGCTTTACCTTTCCAGCCAAGCGGATCACCGTCAATCTGGCTCCAGCGGATCTGCCGAAAGAAGGGGGACGT
TATGACCTTCCTATCGCGCTAGCCATTCTGGCAGCCTCTGAGCAAATTGCTGGTGAGAAACTCGCACAATATGAGTTCCT
CGGTGAACTTGGATTATCAGGCAGCCTGAGGGGCGTTCATGGCGCGATTCCTGCAGCCATGGAGGCGCAAAAGGTAGGGA
GGGGATTAATCCTGCCAGAAGACAACAAACTGGAAATGACCCTGATTCCCCACGGAGATACGCTACTGGCAAATCATCTG
CTACAAGTTTGTGCTTTTCTGCAAGGGGAGACCGCCTTGTTGCGTGGCAGCGAGATCCCTCACACCATATCCCCCCATAC
CTCAGCGCCAGACCTGAAAGAAATCATTGGCCAGGAACAAGCGAAACGTGCGTTGGAAATCGCTGCGGCAGGCGGACACA
ATTTGCTGTTACTCGGCCCACCAGGAACCGGCAAAACGATGCTGGCCAGCCGCCTGCCCGGTTTACTACCCGAGCTTAAT
GACGATGAAGCACTGGAAAGTGCAGCCATCAATAGCCTGATAGATATTCAGCCGGGTCTGTTGCAATGGCGCAAAAGGCC
ATTCCGCTCGCCTCACCATACCGCATCCATTACGGCGCTGGTTGGCGGAGGGGTGTTACCTAAGCCAGGTGAGATTTCAC
TGGCGCACAATGGCGTACTGTTTCTGGATGAACTGCCAGAATTTGAGCGGCGAGTGCTGGATTCACTGCGAGAACCGTTG
GAGTCAGGAGAAATAGTGATTTCTCGCACTCGTGCCAAGGTGTGTTATCCCGCACGCTTTCAGTTAGTCGCCGCCATGAA
TCCCAGCCCGTCAGGGCACTACCAAGGCATCCATAACCGTATGCCAGCACAACAAATTCTGCGTTATCTCAACAGGCTAT
CCGGCCCTTTTCTCGATCGTTTTGATTTATCTATTGAGGTGCCATTGCTACCACCAGGTATTCTCCGACAGCAGACACGC
ATCGGGGAAGACAGCGCAACCGTAAGGGCACGGGTATTTGACGCCAGAAAACGGCAACTGGATCGCGTTGGCAGAATCAA
CGCACAAATGAAATCGGATGATATCGCCAGTTACTGTCGACTAAACCATGAGGACGCCACCTATCTGGAAGAGGTGATGA
GCAAGTTAGGATTATCAGTCAGGGCCTGGCATCGGATCCTAAAGGTTTCACGTACGATTGCGGATCTGGGAGGAGAAGAG
CAGATACGTCGCGCTCACTTATCTGAAGCGCTCAGCTATCGCTGTATGGACCGTCTGTTGATTCAACTACACAAGAGCCT
GGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2BYU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

62.624

99.016

0.62
  comM Vibrio campbellii strain DS40M4

60.636

99.016

0.6
  comM Legionella pneumophila str. Paris

51.71

97.835

0.506
  comM Legionella pneumophila strain ERS1305867

51.71

97.835

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.463

Multiple sequence alignment