Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E6B08_RS29315 Genome accession   NZ_CP039371
Coordinates   6327744..6329231 (+) Length   495 a.a.
NCBI ID   WP_136917167.1    Uniprot ID   A0A4D6XMN4
Organism   Pseudomonas putida strain 1290     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6322744..6334231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6B08_RS29285 (E6B08_29285) - 6323028..6323723 (+) 696 WP_136917163.1 HAD family hydrolase -
  E6B08_RS29290 (E6B08_29290) sutA 6324009..6324338 (-) 330 WP_133325359.1 transcriptional regulator SutA -
  E6B08_RS29295 (E6B08_29295) - 6324767..6326098 (-) 1332 WP_136917164.1 ammonium transporter -
  E6B08_RS29300 (E6B08_29300) glnK 6326146..6326484 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  E6B08_RS29305 (E6B08_29305) - 6326871..6327134 (+) 264 WP_136917165.1 accessory factor UbiK family protein -
  E6B08_RS29310 (E6B08_29310) - 6327147..6327590 (+) 444 WP_136917166.1 TOBE domain-containing protein -
  E6B08_RS29315 (E6B08_29315) comM 6327744..6329231 (+) 1488 WP_136917167.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E6B08_RS29320 (E6B08_29320) - 6329384..6330685 (+) 1302 WP_136917168.1 Nramp family divalent metal transporter -
  E6B08_RS29325 (E6B08_29325) - 6330856..6331167 (-) 312 Protein_5709 winged helix-turn-helix domain-containing protein -
  E6B08_RS29330 (E6B08_29330) - 6331347..6331712 (-) 366 WP_136917170.1 helix-turn-helix domain-containing protein -
  E6B08_RS29335 (E6B08_29335) - 6331873..6332847 (+) 975 WP_136917171.1 GlxA family transcriptional regulator -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52594.46 Da        Isoelectric Point: 8.2061

>NTDB_id=358234 E6B08_RS29315 WP_136917167.1 6327744..6329231(+) (comM) [Pseudomonas putida strain 1290]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSSLNYPARRITQNLAPADLPKDGGR
YDLAIALGILAASGQVPVASLADLECLGELALSGKLRPVQGVLPAALAAREAGRALVVPTENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLAPYAANGLLLQQRPYPDLSEVQGQVAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIRSVCGGAPLRSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPMES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPSGRCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARESTTLACAPSG
DTSAAVGARVAEARELQQRRQGCANAFLDLHGLRRHCALEQADQAWLESACERLTLSLRAAHRLLKVARTLADLEGAPSI
ARAHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=358234 E6B08_RS29315 WP_136917167.1 6327744..6329231(+) (comM) [Pseudomonas putida strain 1290]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTAGGCGTGCAGGCGCCGGCTGTCAGCGTCGAAACCCACCTGGCCAA
CGGCCTGCCCCACCTCACCCTGGTGGGTTTACCGGAAACCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCAAGCCTGAACTACCCCGCCCGGCGCATTACCCAGAACCTCGCCCCCGCCGACCTGCCGAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATTCTTGCGGCAAGCGGCCAGGTGCCGGTGGCCAGCCTGGCCGACCTCGAATGCCT
CGGCGAGCTGGCGCTGTCCGGCAAGCTGCGGCCAGTCCAGGGCGTGCTCCCCGCCGCATTGGCGGCGCGGGAGGCCGGGC
GCGCCCTGGTGGTGCCCACGGAAAACGCCGAGGAAGCGAGCCTGGCCGGTGGGCTGGTGGTCTATGCCGTGGGCCACTTG
CTGGAGCTGGTGGCCCACCTTAACGGCCAGGTGCCGCTGGCGCCCTATGCTGCCAACGGCCTGCTGCTGCAACAACGGCC
CTATCCCGACCTCAGCGAGGTACAGGGCCAGGTAGCCGCCAAGCGTGCGCTGCTGCTGGCTGCAGCGGGAGCACACAACC
TGTTGTTCACCGGGCCACCGGGCACCGGCAAGACCTTGCTGGCCAGCCGGCTGCCGGGGTTGTTGCCGCCGCTGGACGAA
CACGAGGCATTGGAAGTCGCGGCCATCCGCTCGGTGTGCGGTGGCGCGCCGTTGCGAAGCTGGCCGCAGCGGCCGTTTCG
TCACCCTCATCATTCGGCGTCGGGGCCTGCACTGGTGGGCGGCAGCAGCCGACCGCAACCCGGCGAGATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTCGACGAACTGCCCGAGTTCGAAAGGCGCGTGCTTGAGGTGCTGCGTGAGCCCATGGAATCG
GGTGAGATCGTTATCGCCAGGGCTCGCGACAAGGTGCGCTTCCCGGCCCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGATCCCTCCGGGCGCTGCCGCTGCAGCCCCGAACAAATCCAGCGCTATCGCAACAAGCTGT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAAAGCACGACCCTGGCCTGCGCGCCCAGTGGC
GATACCAGCGCCGCCGTCGGCGCCCGGGTCGCCGAGGCACGAGAGCTGCAGCAGCGCCGCCAGGGCTGCGCCAATGCCTT
CCTCGACCTGCACGGCCTGCGCCGGCACTGCGCCCTGGAGCAAGCCGACCAGGCTTGGCTGGAAAGTGCCTGCGAGCGCC
TGACGCTATCCCTGCGCGCCGCTCATCGGTTGCTCAAGGTGGCGCGAACGCTCGCCGACCTGGAAGGCGCACCTTCTATA
GCCCGAGCACATCTGGCAGAAGCCCTGCAGTACCGGCCTGGTAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4D6XMN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.566

100

0.566
  comM Vibrio campbellii strain DS40M4

55.96

100

0.56
  comM Haemophilus influenzae Rd KW20

55.2

100

0.558
  comM Glaesserella parasuis strain SC1401

53.678

100

0.545
  comM Legionella pneumophila str. Paris

49.798

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.798

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477

Multiple sequence alignment