Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E7703_RS24310 Genome accession   NZ_CP039327
Coordinates   4960121..4961641 (+) Length   506 a.a.
NCBI ID   WP_128317241.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain Effluent_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4955121..4966641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E7703_RS24290 (E7703_24430) - 4956677..4957606 (-) 930 WP_003829030.1 branched-chain amino acid transaminase -
  E7703_RS24295 (E7703_24435) ilvM 4957624..4957887 (-) 264 WP_136392476.1 acetolactate synthase 2 small subunit -
  E7703_RS24300 (E7703_24440) ilvG 4957884..4959530 (-) 1647 WP_079935205.1 acetolactate synthase 2 catalytic subunit -
  E7703_RS24305 (E7703_24445) ilvL 4959670..4959768 (-) 99 WP_001311244.1 ilv operon leader peptide -
  E7703_RS24310 (E7703_24450) comM 4960121..4961641 (+) 1521 WP_128317241.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E7703_RS24315 (E7703_24455) maoP 4961666..4962004 (-) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  E7703_RS24320 (E7703_24460) hdfR 4962111..4962956 (+) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55080.03 Da        Isoelectric Point: 7.6396

>NTDB_id=358098 E7703_RS24310 WP_128317241.1 4960121..4961641(+) (comM) [Citrobacter portucalensis strain Effluent_1]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASKQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENASEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQVKG
EDSATVKQRVIAARERQYRRQNKLNAQLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=358098 E7703_RS24310 WP_128317241.1 4960121..4961641(+) (comM) [Citrobacter portucalensis strain Effluent_1]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAGGTACATATCAGCAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCTCGCGATCGAGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCAGCGTCTAAGCAGCTTACAACCCATAACCTCGATACATACGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGTGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCTTCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCCGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGGCTGGAGCTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCACATCACAGTGCTTCATTAACTGCCATGGTCGGTGGCGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCTAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACGCTACGCTACCTCAATCGATTATCAGGCC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGGTAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATAGCAGCACGAGAGCGTCAGTATCGGCGGCAGAATAAGTTAAATGCGCA
ACTGGACAGTCAGGATATCCATAAATACTGTCCACTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATA
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.874

100

0.581
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Legionella pneumophila str. Paris

46.881

98.221

0.46
  comM Legionella pneumophila strain ERS1305867

46.881

98.221

0.46
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

99.605

0.427

Multiple sequence alignment