Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GR340_RS06110 Genome accession   NZ_CP047197
Coordinates   1142066..1142614 (+) Length   182 a.a.
NCBI ID   WP_002780252.1    Uniprot ID   -
Organism   Campylobacter coli strain JZ_1_95     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1137066..1147614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR340_RS06080 (GR340_05975) rseP 1137291..1138394 (+) 1104 Protein_1172 RIP metalloprotease RseP -
  GR340_RS06085 (GR340_05980) - 1138391..1139249 (+) 859 Protein_1173 VirK family antimicrobial peptide resistance protein -
  GR340_RS06090 (GR340_05985) - 1139242..1140243 (-) 1002 WP_277737289.1 TIM barrel protein -
  GR340_RS09500 (GR340_05990) - 1140243..1141401 (-) 1159 Protein_1175 MFS transporter -
  GR340_RS06105 (GR340_05995) rpsF 1141680..1142057 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  GR340_RS06110 (GR340_06000) ssb 1142066..1142614 (+) 549 WP_002780252.1 single-stranded DNA-binding protein Machinery gene
  GR340_RS06115 (GR340_06005) rpsR 1142625..1142885 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  GR340_RS06120 (GR340_06010) lon 1142942..1145317 (-) 2376 WP_277737290.1 endopeptidase La -
  GR340_RS06125 (GR340_06015) bamD 1145333..1145980 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  GR340_RS06130 (GR340_06020) fliW 1146144..1146533 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  GR340_RS06135 (GR340_06025) proC 1146533..1147270 (+) 738 WP_233908840.1 pyrroline-5-carboxylate reductase Machinery gene
  GR340_RS06140 (GR340_06030) ctsT 1147267..1147572 (+) 306 WP_002777852.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20681.56 Da        Isoelectric Point: 4.8501

>NTDB_id=357972 GR340_RS06110 WP_002780252.1 1142066..1142614(+) (ssb) [Campylobacter coli strain JZ_1_95]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEILGNNPQQGGNLNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=357972 GR340_RS06110 WP_002780252.1 1142066..1142614(+) (ssb) [Campylobacter coli strain JZ_1_95]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATACTAGGAAACAA
TCCTCAACAAGGTGGAAATCTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

36.066

100

0.363

Multiple sequence alignment