Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E6A55_RS01615 Genome accession   NZ_CP039287
Coordinates   338359..339903 (-) Length   514 a.a.
NCBI ID   WP_011614457.1    Uniprot ID   Q0KEV3
Organism   Cupriavidus necator H16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 333359..344903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6A55_RS01595 (E6A55_01595) - 333519..334583 (+) 1065 WP_011614456.1 porin -
  E6A55_RS01600 (E6A55_01600) nagA 334626..335729 (+) 1104 WP_010814849.1 N-acetylglucosamine-6-phosphate deacetylase -
  E6A55_RS01605 (E6A55_01605) - 335722..336753 (+) 1032 WP_010814848.1 SIS domain-containing protein -
  E6A55_RS01610 (E6A55_01610) zwf 336812..338299 (+) 1488 WP_010814847.1 glucose-6-phosphate dehydrogenase -
  E6A55_RS01615 (E6A55_01615) comM 338359..339903 (-) 1545 WP_011614457.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E6A55_RS01620 (E6A55_01620) - 339984..340262 (-) 279 WP_010814845.1 accessory factor UbiK family protein -
  E6A55_RS01625 (E6A55_01625) - 340649..341446 (+) 798 WP_010814844.1 TorF family putative porin -
  E6A55_RS01630 (E6A55_01630) - 341499..341837 (+) 339 WP_010814843.1 P-II family nitrogen regulator -
  E6A55_RS01635 (E6A55_01635) amt 341870..343417 (+) 1548 WP_011614458.1 ammonium transporter -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 54642.71 Da        Isoelectric Point: 8.0801

>NTDB_id=357872 E6A55_RS01615 WP_011614457.1 338359..339903(-) (comM) [Cupriavidus necator H16]
MSLAVLRSRALTGIAAPPVRVETHLANGLPAFTIVGLADTGVRESRERVRAAILNSGYEFPNRRITVNLAPADLPKESGR
FDLAIALGILAASGQIPSEALDAHEFAAELSLSGELRPVRGALAMAMGLARDNAARAAAGEAPRAFLVAAGNGAEAALIE
DLAVHAAATLRQACDHLCPLPDARLPRSMPALLPAATDRGPDMRDVRGQAQARRAMEVAAAGQHSALLVGPPGTGKSMLA
QRLPGLLPPMTLQEALESAAVMSLTPGGFRTALWGQRPFRSPHHTASGPAMVGGGGNPRPGEISLAHHGVLFLDELPEFD
RRVLEVLREPLESGRITIARAAGHADFPACFQFVAAMNPCPCGYLGHPDRPCRCTPDQVRRYQSRISGPMLDRIDLQVEV
PAQDQGEMLDGPPGEPSAVVCTRVLAARERQLARQGKPNNELGGREIEQHCTMEAQAQALLRGAMTRLAWSARSYYRVLK
VARTIADLEGAEVLTATHVGEAIQYRRALRMAGG

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=357872 E6A55_RS01615 WP_011614457.1 338359..339903(-) (comM) [Cupriavidus necator H16]
ATGAGCCTTGCCGTCCTACGCAGCCGGGCACTGACCGGCATCGCCGCGCCGCCGGTGCGGGTCGAGACCCACCTCGCCAA
CGGCCTGCCGGCATTCACCATCGTCGGCCTGGCCGACACCGGCGTGCGCGAAAGCCGCGAGCGCGTGCGCGCCGCCATCC
TCAACAGCGGTTACGAGTTCCCCAACCGCCGCATCACCGTCAACCTGGCCCCGGCCGACCTGCCCAAGGAATCCGGCCGC
TTCGACCTGGCCATCGCGCTGGGCATCCTGGCCGCCAGCGGCCAGATCCCGTCCGAGGCACTGGATGCTCATGAGTTCGC
CGCCGAGCTGTCCCTGTCCGGCGAACTGCGCCCCGTGCGCGGCGCGCTGGCCATGGCCATGGGCCTGGCGCGCGACAACG
CCGCCCGCGCCGCCGCCGGCGAGGCGCCGCGCGCCTTCCTGGTGGCCGCAGGCAATGGCGCCGAAGCCGCGCTGATCGAG
GACCTGGCGGTGCATGCCGCCGCGACGCTGCGCCAGGCGTGCGACCATCTCTGCCCCCTGCCCGACGCGCGGCTGCCCCG
CTCCATGCCGGCGTTGCTGCCCGCCGCCACGGACCGCGGCCCCGACATGCGCGACGTACGCGGCCAGGCCCAGGCGCGCC
GGGCCATGGAAGTGGCCGCCGCCGGCCAGCATTCCGCCCTGCTGGTGGGCCCGCCGGGCACCGGCAAGTCGATGCTGGCG
CAGCGCCTGCCCGGGCTGCTGCCGCCGATGACGCTGCAGGAAGCACTGGAGTCCGCCGCGGTCATGAGCCTGACGCCGGG
CGGCTTCCGCACCGCGCTATGGGGCCAGCGCCCGTTCCGGTCGCCGCACCATACGGCATCGGGGCCGGCCATGGTCGGCG
GCGGCGGCAACCCGCGCCCGGGTGAGATCTCGCTGGCGCACCACGGCGTGCTGTTCCTGGACGAGCTGCCCGAATTCGAC
CGCAGGGTGCTGGAAGTCCTGCGCGAGCCGCTGGAATCCGGCCGCATTACCATCGCCCGCGCCGCCGGCCACGCCGACTT
CCCCGCCTGCTTCCAGTTCGTCGCGGCGATGAACCCCTGCCCGTGCGGCTACCTCGGCCATCCCGACCGCCCCTGCCGCT
GCACGCCCGACCAGGTGCGGCGCTACCAGTCCCGCATCTCCGGCCCGATGCTCGACCGCATCGACCTGCAGGTGGAAGTC
CCAGCGCAGGACCAGGGCGAGATGCTCGACGGCCCGCCTGGCGAACCCAGCGCCGTGGTGTGCACCCGCGTGCTGGCCGC
GCGCGAGCGCCAGCTGGCCCGGCAGGGCAAGCCCAACAATGAACTGGGCGGACGCGAGATCGAACAGCACTGCACGATGG
AAGCACAGGCGCAGGCACTGCTGCGCGGCGCGATGACGCGGCTGGCGTGGTCGGCGCGGTCGTACTACCGCGTGCTGAAG
GTGGCCCGCACCATCGCGGACCTGGAAGGTGCCGAGGTGCTGACCGCCACGCATGTGGGCGAGGCGATCCAGTACCGGCG
GGCGTTGCGGATGGCGGGCGGTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0KEV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.172

99.611

0.51
  comM Vibrio campbellii strain DS40M4

50.485

100

0.506
  comM Legionella pneumophila strain ERS1305867

48.269

100

0.488
  comM Legionella pneumophila str. Paris

48.269

100

0.488
  comM Haemophilus influenzae Rd KW20

48.45

100

0.486
  comM Glaesserella parasuis strain SC1401

47.969

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.243

100

0.436

Multiple sequence alignment