Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GR129_RS25200 Genome accession   NZ_CP047144
Coordinates   5602384..5604009 (+) Length   541 a.a.
NCBI ID   WP_159705422.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5597384..5609009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS25165 (GR129_25165) lepB 5597445..5598143 (+) 699 WP_145485577.1 signal peptidase I -
  GR129_RS25170 (GR129_25170) lepB 5598136..5599227 (+) 1092 WP_159705413.1 signal peptidase I -
  GR129_RS25175 (GR129_25175) lepB 5599115..5600125 (+) 1011 WP_145485575.1 signal peptidase I -
  GR129_RS25180 (GR129_25180) lepB 5600237..5601022 (+) 786 WP_159705416.1 signal peptidase I -
  GR129_RS25185 (GR129_25185) - 5601012..5601530 (+) 519 WP_159705419.1 NUDIX hydrolase -
  GR129_RS25190 (GR129_25190) - 5601587..5601894 (+) 308 Protein_4976 DUF2469 domain-containing protein -
  GR129_RS25195 (GR129_25195) - 5602021..5602383 (+) 363 WP_167532241.1 YraN family protein -
  GR129_RS25200 (GR129_25200) comM 5602384..5604009 (+) 1626 WP_159705422.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GR129_RS25205 (GR129_25205) dprA 5604006..5605361 (+) 1356 WP_236576467.1 DNA-processing protein DprA -
  GR129_RS25210 (GR129_25210) whiG 5605687..5606529 (+) 843 WP_145485569.1 RNA polymerase sigma factor WhiG -
  GR129_RS25215 (GR129_25215) - 5606595..5607149 (+) 555 WP_159708595.1 TetR/AcrR family transcriptional regulator -
  GR129_RS25220 (GR129_25220) - 5607162..5607758 (-) 597 WP_159705428.1 M23 family metallopeptidase -
  GR129_RS25225 (GR129_25225) rpsB 5608030..5608938 (+) 909 WP_159705431.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56320.70 Da        Isoelectric Point: 6.5641

>NTDB_id=357627 GR129_RS25200 WP_159705422.1 5602384..5604009(+) (comM) [Streptomyces sp. HF10]
MAFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESRDRVRAAVVNSGAPWPAKKLTVGLSPASVPKSGSG
FDLAVAAAVLGAAERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEAALVPGVSVLGVRS
LRQLIAVLAEEPVPEEEPDELGRPDPLLAGLRVPGTGAATGMHSLGAAQHDCEHDLADVVGQTSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAVLPRLTREESLEVTAVHSVAGLLPPGKPLIDIAPYCAPHHSATMQSLVGGGPGIARPGAVSL
AHRGVLFLDEAPEFHSQTLDALRQPLESGHVVIARSAGVVRFPARFLMVLAANPCPCGRFSQRDALCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDPVTRAQLTAPGARGEPTATVADRVRGARERTAARLAGSPWRTNSEVPGRELRSRFQAVSGAMDE
AERSLERGVLTARGIDRVLRVAWTVADLVGHDRPDATDVALALHLRTGVPRGVPMAIGALT

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=357627 GR129_RS25200 WP_159705422.1 5602384..5604009(+) (comM) [Streptomyces sp. HF10]
ATGGCATTCGCCCGCACCTGCTCCGTCGCCCTCGTCGGCGTCGAGGGCGTGGTCGTCGAGGTCCAGGCCGACCTCGAACC
CGGCGTCGCCGCCTTCACCCTGGTCGGCCTCCCGGACAAGAGCCTGACGGAGAGCAGGGACAGGGTGAGGGCGGCGGTGG
TGAATTCCGGCGCGCCGTGGCCCGCCAAGAAGCTCACCGTCGGCCTCAGCCCCGCGTCCGTGCCCAAGAGCGGAAGCGGC
TTCGACCTGGCGGTCGCCGCGGCCGTCCTCGGGGCCGCGGAACGGATCGACCCCCGGGTCCTCGCCGACATCGTGATGAT
CGGGGAACTCGGGCTGGACGGTCGGGTGCGTCCCGTACGGGGCATCCTGCCCGCGGTCCTCGCCGCGGCCGACGCGGGGT
ACGAGCAGGTGGTCGTGCCCGAGTGCGCCGCCGCGGAGGCCGCGCTGGTCCCCGGTGTCTCGGTGCTCGGCGTCCGCAGC
CTGCGCCAGCTCATCGCGGTACTGGCCGAGGAACCCGTGCCCGAGGAGGAGCCCGATGAACTGGGCCGCCCGGACCCGCT
GCTGGCCGGGCTTCGGGTGCCGGGCACCGGCGCCGCCACCGGCATGCACAGTCTCGGCGCGGCCCAGCACGACTGCGAGC
ACGACCTCGCGGACGTCGTCGGCCAGACCTCGGCCCGTACGGCCGTGGAGGTGGCCGCCGCCGGCGGACACCATCTGTTC
CTGGAGGGGCCGCCGGGCGCGGGCAAGACGATGCTGGCCGAACGCCTGCCCGCGGTGCTGCCGAGGCTCACCAGGGAGGA
GTCCCTGGAGGTCACAGCGGTGCACTCGGTGGCGGGGCTGCTGCCACCGGGCAAGCCGCTCATCGACATCGCCCCCTACT
GCGCCCCGCACCACTCGGCGACGATGCAGTCGCTCGTGGGCGGCGGCCCCGGCATCGCGCGCCCGGGGGCGGTGTCCCTC
GCCCATCGCGGAGTGCTGTTCCTGGACGAGGCACCCGAGTTCCACAGCCAGACCCTGGACGCGCTGCGGCAGCCCCTGGA
GTCCGGGCATGTCGTGATCGCGCGCAGCGCGGGAGTGGTCCGCTTTCCGGCGCGCTTCCTGATGGTGCTCGCGGCCAACC
CCTGCCCCTGCGGCCGCTTCTCCCAGCGCGACGCCCTGTGCGAGTGCCCGCCCTCGGCGATCCGCCGCTACCAGGCCCGG
CTCTCCGGGCCCCTGCTGGACCGGGTGGACCTGCGCGTCGAGGTCGATCCGGTCACCCGGGCCCAGCTCACCGCGCCGGG
CGCCCGCGGGGAGCCCACGGCGACCGTCGCGGACCGGGTCCGCGGGGCAAGGGAGCGTACGGCGGCCCGCCTCGCCGGCT
CACCCTGGCGCACCAACAGCGAGGTCCCCGGCAGGGAGCTGCGCAGCCGGTTCCAGGCCGTCAGCGGGGCGATGGACGAG
GCCGAGCGCAGCCTGGAGCGGGGCGTGCTCACCGCCCGTGGCATCGACCGGGTGCTGCGTGTCGCCTGGACGGTCGCCGA
CCTCGTCGGACACGACCGCCCGGACGCGACCGACGTCGCCCTCGCCCTGCATCTGCGCACCGGCGTCCCGCGCGGGGTCC
CGATGGCCATCGGCGCACTGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.962

98.521

0.394
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.228

97.412

0.392
  comM Vibrio cholerae strain A1552

40.228

97.412

0.392
  comM Acinetobacter baylyi ADP1

39.412

94.27

0.372
  comM Haemophilus influenzae Rd KW20

37.57

98.891

0.372
  comM Legionella pneumophila str. Paris

37.594

98.336

0.37
  comM Legionella pneumophila strain ERS1305867

37.594

98.336

0.37
  comM Glaesserella parasuis strain SC1401

36.981

97.967

0.362