Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E5677_RS13615 Genome accession   NZ_CP039251
Coordinates   3279337..3280920 (+) Length   527 a.a.
NCBI ID   WP_062845745.1    Uniprot ID   -
Organism   Psychrobacter sp. PAMC27889     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3274337..3285920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5677_RS13605 (E5677_13605) hemN 3274789..3276246 (-) 1458 WP_228139959.1 oxygen-independent coproporphyrinogen III oxidase -
  E5677_RS13610 (E5677_13610) - 3276666..3279119 (-) 2454 WP_062845746.1 penicillin acylase family protein -
  E5677_RS13615 (E5677_13615) comM 3279337..3280920 (+) 1584 WP_062845745.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E5677_RS13620 (E5677_13620) - 3280967..3281659 (-) 693 WP_062845744.1 phosphoglycolate phosphatase -
  E5677_RS13625 (E5677_13625) - 3281973..3282818 (+) 846 WP_062845743.1 DMT family transporter -
  E5677_RS13630 (E5677_13630) - 3282830..3283330 (-) 501 WP_062845742.1 DUF4385 domain-containing protein -
  E5677_RS13635 (E5677_13635) - 3283642..3283989 (+) 348 WP_136139170.1 hypothetical protein -
  E5677_RS13645 (E5677_13645) - 3284269..3284691 (-) 423 WP_062845740.1 hypothetical protein -
  E5677_RS13650 (E5677_13650) hisB 3285053..3285700 (+) 648 WP_062845739.1 imidazoleglycerol-phosphate dehydratase HisB -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 56808.85 Da        Isoelectric Point: 7.5503

>NTDB_id=357625 E5677_RS13615 WP_062845745.1 3279337..3280920(+) (comM) [Psychrobacter sp. PAMC27889]
MSFAQVYTRSVVGLHAPKVIIEVHLSQGLPALTIVGLPEAAVRESKDRVRSAILNSGFQFPNRRLTINLAPADLPKDGAR
LDLPIAIGILAASGQLAPDVLSGFEFIGELALNGELRQVTGSLAVARAIKAEGLALKMSQQAVEDKEKALSAALPTLQAT
PHLIVPSHNGAEASRVDGITILAAPSLKDVCDHLRSLSGVTDLDKQLQVVQPSPAPQQVGYQVDLADVKGQHHARRALEI
AAAGGHSLLFTGPPGSGKTLMASRLPTILPDLSPEDALEVASTYSVADSNYDYGTRPFRQVHHTISAVALVGGGSRPKPG
EITLANKGVLFLDELPEFDRTVLEVLRQPLEAKQITISRANSQMTFPANFQLVAAMNPCPCGYDGDTSGRCRCRPEQIRR
YQDKLSGPLLDRIDLHITVPALPIADLQNSQAGETSKQVRARVATAYEYQLKRQQKVNNELSPSEIDQYIQLGESEQQLL
QLAQQRLNLSARGYHRVLRVARTIADLAASIDITSAHVSEALSYRGK

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=357625 E5677_RS13615 WP_062845745.1 3279337..3280920(+) (comM) [Psychrobacter sp. PAMC27889]
ATGTCGTTTGCTCAAGTTTATACCCGTTCAGTCGTCGGTTTGCATGCACCCAAAGTCATCATTGAGGTACATTTATCACA
AGGCTTGCCAGCCCTGACCATCGTTGGCCTGCCTGAAGCGGCGGTACGAGAAAGTAAAGATCGCGTGCGTTCTGCGATTC
TTAATTCTGGTTTTCAGTTTCCCAATCGGCGTCTAACGATCAATCTGGCACCCGCTGACTTGCCTAAAGATGGTGCTCGT
TTGGATTTGCCCATTGCGATAGGTATATTGGCGGCAAGCGGACAGTTAGCACCAGACGTGCTATCAGGGTTTGAGTTTAT
CGGTGAGTTGGCACTCAATGGCGAGTTGAGACAAGTGACGGGTAGCCTAGCAGTTGCACGTGCGATCAAAGCGGAAGGAT
TGGCGCTCAAGATGTCGCAACAAGCAGTCGAAGACAAAGAAAAAGCGCTGAGCGCGGCACTACCTACATTGCAAGCGACC
CCGCACCTCATTGTACCGAGCCACAATGGTGCTGAGGCTAGTCGAGTCGACGGCATAACCATACTTGCTGCGCCCAGCTT
AAAAGACGTTTGTGACCATTTACGGTCTTTGTCAGGTGTTACCGATTTGGATAAGCAATTGCAGGTGGTGCAGCCAAGTC
CCGCGCCGCAGCAAGTCGGCTATCAAGTAGATTTAGCCGATGTGAAAGGACAGCATCATGCGAGGCGTGCGCTAGAGATT
GCAGCAGCAGGCGGGCATTCATTACTCTTCACGGGGCCGCCCGGTTCAGGCAAAACATTAATGGCTTCACGACTACCGAC
CATCTTGCCAGATTTGAGTCCTGAGGATGCGTTAGAAGTTGCCAGCACATATTCGGTTGCCGATAGTAATTATGATTATG
GCACGCGACCTTTTAGACAAGTGCATCACACCATATCAGCAGTGGCATTGGTTGGTGGTGGTTCACGTCCCAAACCTGGC
GAGATTACACTCGCCAACAAAGGCGTTTTGTTCCTCGATGAATTGCCAGAATTTGATCGTACGGTATTAGAAGTATTGCG
CCAACCGTTAGAAGCCAAGCAAATCACTATTAGTCGTGCTAACTCACAAATGACGTTTCCAGCCAATTTTCAATTGGTAG
CGGCGATGAATCCGTGCCCGTGTGGTTACGATGGTGATACCTCAGGGCGCTGTCGTTGTCGGCCAGAACAGATCAGGCGC
TATCAAGATAAGTTGTCAGGTCCGCTACTGGACCGCATTGATTTGCATATCACGGTGCCAGCGCTACCGATTGCAGATTT
GCAAAATTCTCAAGCAGGAGAGACTTCCAAGCAGGTGCGTGCTCGGGTCGCGACGGCTTATGAGTATCAATTGAAGCGGC
AGCAGAAAGTGAATAATGAGCTTAGCCCTAGTGAGATTGATCAATACATCCAGTTAGGAGAGAGTGAACAGCAATTATTA
CAACTCGCACAGCAGCGCCTAAACTTGTCCGCGCGCGGCTATCATCGTGTACTACGAGTGGCAAGGACGATTGCCGATCT
TGCAGCAAGTATTGATATTACCAGCGCGCATGTGTCAGAAGCACTCAGCTATCGTGGTAAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(433-525)

Subunit ChlI of Mg-chelatase (ChlI)

(21-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(224-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

48.679

100

0.49
  comM Legionella pneumophila str. Paris

48.679

100

0.49
  comM Glaesserella parasuis strain SC1401

47.866

100

0.49
  comM Vibrio cholerae strain A1552

48.582

100

0.488
  comM Vibrio campbellii strain DS40M4

48.302

100

0.486
  comM Haemophilus influenzae Rd KW20

48.393

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.187

100

0.421

Multiple sequence alignment