Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | E5677_RS11910 | Genome accession | NZ_CP039251 |
| Coordinates | 2879629..2880069 (-) | Length | 146 a.a. |
| NCBI ID | WP_062843708.1 | Uniprot ID | - |
| Organism | Psychrobacter sp. PAMC27889 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2874629..2885069
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5677_RS11890 (E5677_11890) | - | 2874802..2876118 (-) | 1317 | WP_084387217.1 | flippase | - |
| E5677_RS11895 (E5677_11895) | - | 2876193..2877461 (-) | 1269 | WP_062843710.1 | sugar transferase | - |
| E5677_RS11900 (E5677_11900) | - | 2877613..2878032 (-) | 420 | WP_167541793.1 | pilin | - |
| E5677_RS11905 (E5677_11905) | - | 2878205..2879524 (-) | 1320 | WP_228139886.1 | O-antigen ligase family protein | - |
| E5677_RS11910 (E5677_11910) | pilA | 2879629..2880069 (-) | 441 | WP_062843708.1 | pilin | Machinery gene |
| E5677_RS11915 (E5677_11915) | - | 2880350..2880814 (-) | 465 | WP_062843707.1 | type IV pilin protein | - |
| E5677_RS11920 (E5677_11920) | - | 2880814..2881365 (-) | 552 | WP_062843706.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14797.88 Da Isoelectric Point: 7.7782
>NTDB_id=357621 E5677_RS11910 WP_062843708.1 2879629..2880069(-) (pilA) [Psychrobacter sp. PAMC27889]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLIDGAKAEVNTNLEGNSCTNATAAKNTIAGKYGSLV
IAGTAASDASPTASTGCTLTYTFKGTGVSSQLASKVIGATLLNNGTLTKNATTTTVDADILPKSFT
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLIDGAKAEVNTNLEGNSCTNATAAKNTIAGKYGSLV
IAGTAASDASPTASTGCTLTYTFKGTGVSSQLASKVIGATLLNNGTLTKNATTTTVDADILPKSFT
Nucleotide
Download Length: 441 bp
>NTDB_id=357621 E5677_RS11910 WP_062843708.1 2879629..2880069(-) (pilA) [Psychrobacter sp. PAMC27889]
ATGAACGCTCAAAAAGGTTTTACCTTAATCGAACTAATGATCGTTGTTGCTATTATCGGTATTTTAGCTGCGATCGCTAT
TCCTGCTTATCAGAATTACATTGCTAAGTCACAAGCATCAGAAGCGTTTACTTTGATAGATGGAGCAAAAGCTGAGGTTA
ATACTAATTTAGAAGGCAATAGCTGTACTAATGCTACTGCTGCTAAAAATACAATTGCTGGTAAGTATGGTAGTTTAGTA
ATTGCTGGTACTGCTGCTAGTGATGCTTCGCCAACCGCATCAACGGGTTGTACACTTACTTATACATTTAAAGGAACTGG
TGTATCAAGTCAGCTAGCGTCTAAAGTAATTGGTGCTACATTACTTAACAACGGTACTTTGACTAAAAATGCTACCACTA
CTACAGTTGATGCTGATATCTTACCTAAATCATTCACTTAA
ATGAACGCTCAAAAAGGTTTTACCTTAATCGAACTAATGATCGTTGTTGCTATTATCGGTATTTTAGCTGCGATCGCTAT
TCCTGCTTATCAGAATTACATTGCTAAGTCACAAGCATCAGAAGCGTTTACTTTGATAGATGGAGCAAAAGCTGAGGTTA
ATACTAATTTAGAAGGCAATAGCTGTACTAATGCTACTGCTGCTAAAAATACAATTGCTGGTAAGTATGGTAGTTTAGTA
ATTGCTGGTACTGCTGCTAGTGATGCTTCGCCAACCGCATCAACGGGTTGTACACTTACTTATACATTTAAAGGAACTGG
TGTATCAAGTCAGCTAGCGTCTAAAGTAATTGGTGCTACATTACTTAACAACGGTACTTTGACTAAAAATGCTACCACTA
CTACAGTTGATGCTGATATCTTACCTAAATCATTCACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter nosocomialis M2 |
58.389 |
100 |
0.596 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.667 |
100 |
0.438 |
| pilA | Vibrio cholerae strain A1552 |
42.667 |
100 |
0.438 |
| pilA | Vibrio cholerae C6706 |
42.667 |
100 |
0.438 |
| pilA | Pseudomonas aeruginosa PAK |
41.333 |
100 |
0.425 |