Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GR129_RS05395 Genome accession   NZ_CP047144
Coordinates   1303843..1304469 (+) Length   208 a.a.
NCBI ID   WP_145486130.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1298843..1309469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS05365 (GR129_05365) ureG 1299456..1300133 (-) 678 WP_159699222.1 urease accessory protein UreG -
  GR129_RS05370 (GR129_05370) - 1300175..1300849 (-) 675 WP_159699225.1 urease accessory UreF family protein -
  GR129_RS05375 (GR129_05375) - 1300869..1302590 (-) 1722 WP_159699228.1 urease subunit alpha -
  GR129_RS05380 (GR129_05380) - 1302583..1302894 (-) 312 WP_159699231.1 urease subunit beta -
  GR129_RS05385 (GR129_05385) - 1302906..1303208 (-) 303 WP_145486128.1 urease subunit gamma -
  GR129_RS05390 (GR129_05390) - 1303452..1303754 (-) 303 WP_145486129.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  GR129_RS05395 (GR129_05395) clpP 1303843..1304469 (+) 627 WP_145486130.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR129_RS05400 (GR129_05400) - 1304477..1304785 (+) 309 WP_145486131.1 hypothetical protein -
  GR129_RS05405 (GR129_05405) - 1305360..1305833 (+) 474 WP_145486132.1 C40 family peptidase -
  GR129_RS05410 (GR129_05410) - 1305987..1306445 (-) 459 WP_159699234.1 ATP-binding protein -
  GR129_RS05415 (GR129_05415) - 1306659..1307522 (+) 864 WP_159699237.1 helix-turn-helix transcriptional regulator -
  GR129_RS05420 (GR129_05420) - 1307533..1307757 (+) 225 WP_145486135.1 DUF397 domain-containing protein -
  GR129_RS05425 (GR129_05425) - 1307789..1308916 (-) 1128 WP_159699240.1 8-amino-7-oxononanoate synthase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23140.35 Da        Isoelectric Point: 4.9601

>NTDB_id=357582 GR129_RS05395 WP_145486130.1 1303843..1304469(+) (clpP) [Streptomyces sp. HF10]
MSRPSARYVLPEFTERTSVGERRLDPYSKLFENRVVFLGTPLDEAAASDVITQFMHLEHLDPDRDITLYLNCPGGSFHAM
TAVYDTMRYVTCEVQTYCLGQAASVGAVLLAAGTPGKRFTLPGARVVLSQPELPEPAQGQPSDLLIQAEELVRLRTLMEE
MLVRHTGRTEEQVHRDLERDLMLDAPGARSYGLVDGVVPGRRDLPGER

Nucleotide


Download         Length: 627 bp        

>NTDB_id=357582 GR129_RS05395 WP_145486130.1 1303843..1304469(+) (clpP) [Streptomyces sp. HF10]
ATGTCCCGACCGTCCGCCCGCTACGTCCTGCCCGAGTTCACCGAGCGCACCAGCGTCGGGGAGCGGCGGCTCGATCCCTA
CTCGAAGCTGTTCGAGAACCGGGTCGTCTTCCTCGGGACGCCCCTGGACGAGGCGGCGGCCAGTGACGTGATCACCCAGT
TCATGCACCTCGAACACCTGGACCCGGACCGGGACATCACGCTCTACCTGAACTGCCCGGGCGGCTCGTTCCACGCGATG
ACGGCGGTCTACGACACGATGCGGTACGTCACCTGTGAGGTGCAGACGTACTGCCTGGGCCAGGCCGCCTCGGTCGGCGC
CGTGCTGCTGGCCGCCGGCACCCCCGGCAAGCGGTTCACCCTGCCCGGCGCGCGCGTGGTGCTCTCCCAGCCCGAGCTGC
CCGAGCCGGCCCAGGGCCAGCCGAGCGATCTGCTCATCCAGGCCGAGGAACTGGTCCGGCTGCGCACCCTGATGGAGGAG
ATGCTGGTCCGGCACACCGGGCGCACCGAGGAGCAGGTCCACCGGGACCTGGAGCGCGATCTCATGCTGGACGCGCCGGG
CGCGCGGTCGTACGGGCTGGTGGACGGCGTGGTGCCCGGCCGCCGGGACCTCCCCGGCGAGCGGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

40

93.75

0.375
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.741

90.865

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

39.583

92.308

0.365
  clpP Streptococcus pyogenes JRS4

38.86

92.788

0.361
  clpP Streptococcus pyogenes MGAS315

38.86

92.788

0.361