Detailed information NTG0357538

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: PsalN5692_RS17070
• Genome accession: NZ_CP039219
• Coordinates: 3210422..3211549 (-)
• Length: 375 a.a.
• NCBI ID: WP_230388782.1
• Uniprot ID: -
• Organism: Piscirickettsia salmonis strain NVI 5692
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3205422..3216549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PsalN5692_RS17055 (PsalN5692_03432)	-	3205470..3206627 (+)	1158	WP_155068516.1	efflux RND transporter periplasmic adaptor subunit	-
PsalN5692_RS17060 (PsalN5692_03433)	-	3206647..3209754 (+)	3108	WP_155068517.1	efflux RND transporter permease subunit	-
PsalN5692_RS17065	-	3209756..3210232 (-)	477	WP_155068518.1	ATP-binding protein	-
PsalN5692_RS17070	comM	3210422..3211549 (-)	1128	WP_230388782.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
PsalN5692_RS17075 (PsalN5692_03435)	-	3211577..3211858 (-)	282	WP_155068519.1	accessory factor UbiK family protein	-
PsalN5692_RS17080 (PsalN5692_03436)	-	3212007..3212348 (+)	342	WP_016209709.1	P-II family nitrogen regulator	-
PsalN5692_RS17085 (PsalN5692_03437)	speA	3212469..3214349 (+)	1881	WP_155068520.1	biosynthetic arginine decarboxylase	-
PsalN5692_RS17090 (PsalN5692_03438)	-	3214433..3215950 (-)	1518	WP_155068521.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 40054.77 Da
• Isoelectric Point: 7.2685

>NTDB_id=357538 PsalN5692_RS17070 WP_230388782.1 3210422..3211549(-) (comM) [Piscirickettsia salmonis strain NVI 5692]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLATLVEGLSVYRANNL
ASISAFLKGEGDLEQAYFQVDTRQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEIDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQSLRAKECKARGE

Nucleotide

• Length: 1128 bp

>NTDB_id=357538 PsalN5692_RS17070 WP_230388782.1 3210422..3211549(-) (comM) [Piscirickettsia salmonis strain NVI 5692]
ATGAAATTAGCAATTGTTTACTCGCGTGCTCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCCTACCGGGCTTTACTATTGTTGGACTGCCGGATGCGGCAGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAATCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTATCTGGTGAAGTACGTTCTGTCACTGGTGCTTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGACCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGCGAAGGCGATTTAGAACAGGCATATTTTCAAGTCGATACACGGCAAACACACTA
TTTAGATATGGCGGATGTCAAAGGTCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCGGCAGGTCGTCACCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGTTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAATTGATTTATCATGTTGGTTTATCCCTAAGTTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCAAAACCTGGTGAAATTTCTCGAGCCC
ATCATGGGGTGTTATTTTTAGATGAGTTGCCTGAATTTGACCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCT
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCGTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTCGCTGCGAGCCAAGGAGTGCAAGGCACGGG
GTGAGTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (189-366)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	56.369	98.4	0.555
comM	Haemophilus influenzae Rd KW20	56.065	98.933	0.555
comM	Vibrio cholerae strain A1552	55.978	98.133	0.549
comM	Glaesserella parasuis strain SC1401	55.405	98.667	0.547
comM	Legionella pneumophila str. Paris	54.27	96.8	0.525
comM	Legionella pneumophila strain ERS1305867	54.27	96.8	0.525
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.499	95.2	0.443