Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal163_RS14985 | Genome accession | NZ_CP039201 |
| Coordinates | 2955919..2957424 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-163 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2907814..2976809 | 2955919..2957424 | within | 0 |
Gene organization within MGE regions
Location: 2907814..2976809
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal163_RS14755 (Psal163_02979) | - | 2907814..2908788 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal163_RS14760 (Psal163_02980) | - | 2908864..2909883 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal163_RS14765 | - | 2909931..2910077 (-) | 147 | WP_155047000.1 | hypothetical protein | - |
| Psal163_RS14770 | - | 2910282..2910467 (-) | 186 | WP_155047001.1 | hypothetical protein | - |
| Psal163_RS14775 (Psal163_02982) | - | 2911366..2912448 (+) | 1083 | WP_054300162.1 | IS481 family transposase | - |
| Psal163_RS14780 (Psal163_02983) | - | 2912496..2913557 (-) | 1062 | WP_054300161.1 | transposase | - |
| Psal163_RS14785 (Psal163_02984) | - | 2913638..2913946 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal163_RS14790 (Psal163_02985) | - | 2914061..2915377 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal163_RS14795 (Psal163_02986) | - | 2915839..2917056 (-) | 1218 | WP_036778698.1 | multidrug effflux MFS transporter | - |
| Psal163_RS14800 (Psal163_02987) | - | 2917198..2918094 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal163_RS14805 (Psal163_02988) | - | 2918181..2919179 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal163_RS14810 (Psal163_02989) | aroK | 2919288..2919812 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal163_RS14815 (Psal163_02990) | pilQ | 2920060..2921319 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal163_RS17305 | - | 2921565..2921708 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal163_RS14820 (Psal163_02991) | - | 2921846..2922319 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal163_RS14825 (Psal163_02992) | - | 2922316..2922831 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal163_RS14830 (Psal163_02993) | - | 2922828..2923640 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal163_RS14835 (Psal163_02994) | - | 2923641..2924216 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal163_RS14840 (Psal163_02995) | - | 2924162..2924527 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal163_RS14845 (Psal163_02996) | - | 2924792..2927122 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal163_RS14850 (Psal163_02997) | - | 2927243..2929258 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal163_RS14855 (Psal163_02998) | - | 2929442..2932834 (+) | 3393 | WP_054300160.1 | hypothetical protein | - |
| Psal163_RS14860 (Psal163_02999) | - | 2932899..2933204 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal163_RS17755 | - | 2933395..2933859 (-) | 465 | Protein_2963 | IS630 family transposase | - |
| Psal163_RS14875 (Psal163_03001) | - | 2933924..2934280 (-) | 357 | WP_155083633.1 | IS630 transposase-related protein | - |
| Psal163_RS14880 (Psal163_03002) | - | 2934371..2935432 (+) | 1062 | WP_257786782.1 | transposase | - |
| Psal163_RS14885 (Psal163_03003) | - | 2935656..2936936 (+) | 1281 | WP_054300157.1 | hypothetical protein | - |
| Psal163_RS14890 (Psal163_03004) | - | 2937119..2937448 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal163_RS14895 (Psal163_03005) | - | 2937769..2938134 (+) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal163_RS14900 (Psal163_03006) | - | 2938149..2938655 (+) | 507 | WP_155047004.1 | IS630 family transposase | - |
| Psal163_RS14905 (Psal163_03007) | - | 2938645..2938887 (-) | 243 | WP_230384577.1 | phospholipase D-like domain-containing protein | - |
| Psal163_RS14910 (Psal163_03008) | - | 2938938..2939303 (+) | 366 | WP_054300209.1 | IS630 transposase-related protein | - |
| Psal163_RS14915 (Psal163_03009) | - | 2939318..2939923 (+) | 606 | WP_155047002.1 | IS630 family transposase | - |
| Psal163_RS14920 (Psal163_03010) | asnS | 2940294..2941691 (-) | 1398 | WP_036776867.1 | asparagine--tRNA ligase | - |
| Psal163_RS14925 (Psal163_03011) | trbB | 2941811..2942758 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal163_RS14930 (Psal163_03012) | - | 2942755..2943219 (-) | 465 | WP_230384578.1 | S26 family signal peptidase | - |
| Psal163_RS14935 (Psal163_03013) | - | 2943257..2944456 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal163_RS14940 (Psal163_03014) | - | 2944453..2944761 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal163_RS14945 (Psal163_03015) | - | 2944778..2946007 (-) | 1230 | WP_016209703.1 | TrbI/VirB10 family protein | - |
| Psal163_RS14950 (Psal163_03016) | - | 2946007..2947050 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal163_RS14955 (Psal163_03017) | trbF | 2947050..2947733 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal163_RS14960 (Psal163_03018) | trbE | 2947730..2950219 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal163_RS14965 (Psal163_03019) | - | 2950236..2950490 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal163_RS14970 (Psal163_03020) | - | 2950491..2950784 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal163_RS14975 (Psal163_03021) | - | 2951633..2952790 (+) | 1158 | WP_032126705.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| Psal163_RS14980 (Psal163_03022) | - | 2952810..2955917 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal163_RS14985 (Psal163_03023) | comM | 2955919..2957424 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal163_RS14990 (Psal163_03024) | - | 2957452..2957733 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal163_RS14995 (Psal163_03025) | - | 2957882..2958223 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal163_RS15000 (Psal163_03026) | speA | 2958343..2960223 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal163_RS15005 (Psal163_03027) | - | 2960308..2961906 (-) | 1599 | WP_075274705.1 | hypothetical protein | - |
| Psal163_RS15010 (Psal163_03028) | - | 2961924..2963039 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal163_RS15015 (Psal163_03029) | aroF | 2963167..2964165 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal163_RS15020 (Psal163_03030) | trpA | 2964169..2964927 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal163_RS15025 (Psal163_03031) | trpB | 2964929..2966128 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal163_RS15030 (Psal163_03032) | - | 2966112..2966783 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal163_RS15035 (Psal163_03033) | - | 2966805..2967581 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal163_RS15040 (Psal163_03034) | trpD | 2967585..2968583 (-) | 999 | WP_016209717.1 | anthranilate phosphoribosyltransferase | - |
| Psal163_RS15045 (Psal163_03035) | - | 2968585..2969163 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal163_RS15050 (Psal163_03036) | - | 2969160..2970629 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal163_RS15055 (Psal163_03037) | trpR | 2970673..2970960 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal163_RS15060 (Psal163_03038) | - | 2971092..2972066 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal163_RS17310 (Psal163_03039) | - | 2972110..2972346 (+) | 237 | WP_054300153.1 | hypothetical protein | - |
| Psal163_RS15065 (Psal163_03040) | - | 2972327..2972863 (+) | 537 | WP_172673404.1 | DMT family transporter | - |
| Psal163_RS15070 (Psal163_03041) | - | 2972890..2973255 (+) | 366 | WP_054300152.1 | IS630 transposase-related protein | - |
| Psal163_RS15075 (Psal163_03042) | - | 2973312..2973467 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal163_RS15080 (Psal163_03043) | - | 2973612..2974064 (+) | 453 | WP_075273401.1 | IS630 family transposase | - |
| Psal163_RS15085 | - | 2974084..2974434 (+) | 351 | Protein_3007 | DMT family transporter | - |
| Psal163_RS15090 (Psal163_03044) | - | 2974534..2975655 (-) | 1122 | WP_054300150.1 | transposase | - |
| Psal163_RS15095 | - | 2975923..2976809 (+) | 887 | WP_155047003.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=357478 Psal163_RS14985 WP_016209723.1 2955919..2957424(-) (comM) [Piscirickettsia salmonis strain Psal-163]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=357478 Psal163_RS14985 WP_016209723.1 2955919..2957424(-) (comM) [Piscirickettsia salmonis strain Psal-163]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |