Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal159_RS14925 | Genome accession | NZ_CP039186 |
| Coordinates | 2946289..2947794 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-159 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2898183..2967179 | 2946289..2947794 | within | 0 |
Gene organization within MGE regions
Location: 2898183..2967179
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal159_RS14695 (Psal159_02966) | - | 2898183..2899157 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal159_RS14700 (Psal159_02967) | - | 2899233..2900252 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal159_RS14705 | - | 2900300..2900446 (-) | 147 | WP_155047000.1 | hypothetical protein | - |
| Psal159_RS14710 (Psal159_02968) | - | 2900651..2900836 (-) | 186 | WP_155047001.1 | hypothetical protein | - |
| Psal159_RS14715 (Psal159_02969) | - | 2901735..2902817 (+) | 1083 | WP_054300162.1 | IS481 family transposase | - |
| Psal159_RS14720 (Psal159_02970) | - | 2902865..2903926 (-) | 1062 | WP_054300161.1 | transposase | - |
| Psal159_RS14725 (Psal159_02971) | - | 2904007..2904315 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal159_RS14730 (Psal159_02972) | - | 2904430..2905746 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal159_RS14735 (Psal159_02973) | - | 2906208..2907425 (-) | 1218 | WP_036778698.1 | multidrug effflux MFS transporter | - |
| Psal159_RS14740 (Psal159_02974) | - | 2907567..2908463 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal159_RS14745 (Psal159_02975) | - | 2908550..2909548 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal159_RS14750 (Psal159_02976) | aroK | 2909657..2910181 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal159_RS14755 (Psal159_02977) | pilQ | 2910429..2911688 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal159_RS17495 | - | 2911934..2912077 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal159_RS14760 (Psal159_02978) | - | 2912215..2912688 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal159_RS14765 (Psal159_02979) | - | 2912685..2913200 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal159_RS14770 (Psal159_02980) | - | 2913197..2914009 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal159_RS14775 (Psal159_02981) | - | 2914010..2914585 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal159_RS14780 (Psal159_02982) | - | 2914531..2914896 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal159_RS14785 (Psal159_02983) | - | 2915161..2917491 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal159_RS14790 (Psal159_02984) | - | 2917612..2919627 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal159_RS14795 (Psal159_02985) | - | 2919811..2923203 (+) | 3393 | WP_054300160.1 | hypothetical protein | - |
| Psal159_RS14800 (Psal159_02986) | - | 2923268..2923573 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal159_RS17860 | - | 2923764..2924228 (-) | 465 | Protein_2950 | IS630 family transposase | - |
| Psal159_RS14815 (Psal159_02988) | - | 2924285..2924650 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal159_RS14820 (Psal159_02989) | - | 2924741..2925802 (+) | 1062 | WP_257786782.1 | transposase | - |
| Psal159_RS14825 (Psal159_02990) | - | 2926026..2927306 (+) | 1281 | WP_054300157.1 | hypothetical protein | - |
| Psal159_RS14830 (Psal159_02991) | - | 2927489..2927818 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal159_RS14835 (Psal159_02992) | - | 2928139..2928504 (+) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal159_RS14840 (Psal159_02993) | - | 2928519..2929025 (+) | 507 | WP_155047004.1 | IS630 family transposase | - |
| Psal159_RS14845 (Psal159_02994) | - | 2929015..2929257 (-) | 243 | WP_230384577.1 | phospholipase D-like domain-containing protein | - |
| Psal159_RS14850 (Psal159_02995) | - | 2929308..2929673 (+) | 366 | WP_054300209.1 | IS630 transposase-related protein | - |
| Psal159_RS14855 (Psal159_02996) | - | 2929688..2930293 (+) | 606 | WP_155047002.1 | IS630 family transposase | - |
| Psal159_RS14860 (Psal159_02997) | asnS | 2930664..2932055 (-) | 1392 | WP_269466441.1 | asparagine--tRNA ligase | - |
| Psal159_RS14865 (Psal159_02998) | trbB | 2932181..2933128 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal159_RS14870 (Psal159_02999) | - | 2933125..2933640 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal159_RS14875 (Psal159_03000) | - | 2933627..2934826 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal159_RS14880 (Psal159_03001) | - | 2934823..2935131 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal159_RS14885 (Psal159_03002) | - | 2935148..2936377 (-) | 1230 | WP_016209703.1 | TrbI/VirB10 family protein | - |
| Psal159_RS14890 (Psal159_03003) | - | 2936377..2937420 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal159_RS14895 (Psal159_03004) | trbF | 2937420..2938103 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal159_RS14900 (Psal159_03005) | trbE | 2938100..2940589 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal159_RS14905 (Psal159_03006) | - | 2940606..2940860 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal159_RS14910 (Psal159_03007) | - | 2940861..2941154 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal159_RS14915 (Psal159_03008) | - | 2942003..2943160 (+) | 1158 | WP_032126705.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| Psal159_RS14920 (Psal159_03009) | - | 2943180..2946287 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal159_RS14925 (Psal159_03010) | comM | 2946289..2947794 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal159_RS14930 (Psal159_03011) | - | 2947822..2948103 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal159_RS14935 (Psal159_03012) | - | 2948252..2948593 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal159_RS14940 (Psal159_03013) | speA | 2948713..2950593 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal159_RS14945 (Psal159_03014) | - | 2950678..2952276 (-) | 1599 | WP_075274705.1 | hypothetical protein | - |
| Psal159_RS14950 (Psal159_03015) | - | 2952294..2953409 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal159_RS14955 (Psal159_03016) | aroF | 2953537..2954535 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal159_RS14960 (Psal159_03017) | trpA | 2954539..2955297 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal159_RS14965 (Psal159_03018) | trpB | 2955299..2956498 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal159_RS14970 (Psal159_03019) | - | 2956482..2957153 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal159_RS14975 (Psal159_03020) | - | 2957175..2957951 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal159_RS14980 (Psal159_03021) | trpD | 2957955..2958953 (-) | 999 | WP_016209717.1 | anthranilate phosphoribosyltransferase | - |
| Psal159_RS14985 (Psal159_03022) | - | 2958955..2959533 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal159_RS14990 (Psal159_03023) | - | 2959530..2960999 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal159_RS14995 (Psal159_03024) | trpR | 2961043..2961330 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal159_RS15000 (Psal159_03025) | - | 2961462..2962436 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal159_RS17500 (Psal159_03026) | - | 2962480..2962716 (+) | 237 | WP_054300153.1 | hypothetical protein | - |
| Psal159_RS15005 (Psal159_03027) | - | 2962697..2963233 (+) | 537 | WP_172673404.1 | DMT family transporter | - |
| Psal159_RS15010 (Psal159_03028) | - | 2963260..2963625 (+) | 366 | WP_054300152.1 | IS630 transposase-related protein | - |
| Psal159_RS15015 (Psal159_03029) | - | 2963682..2963837 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal159_RS15020 (Psal159_03030) | - | 2963982..2964434 (+) | 453 | WP_075273401.1 | IS630 family transposase | - |
| Psal159_RS15025 | - | 2964454..2964804 (+) | 351 | Protein_2994 | DMT family transporter | - |
| Psal159_RS15030 (Psal159_03031) | - | 2964904..2966025 (-) | 1122 | WP_054300150.1 | transposase | - |
| Psal159_RS15035 | - | 2966293..2967179 (+) | 887 | WP_155047003.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=357436 Psal159_RS14925 WP_016209723.1 2946289..2947794(-) (comM) [Piscirickettsia salmonis strain Psal-159]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=357436 Psal159_RS14925 WP_016209723.1 2946289..2947794(-) (comM) [Piscirickettsia salmonis strain Psal-159]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |