Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GQ677_RS10120 Genome accession   NZ_CP047120
Coordinates   1985457..1985885 (-) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 1085     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1980457..1990885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQ677_RS10085 (GQ677_10085) proC 1980825..1981595 (+) 771 WP_136274084.1 pyrroline-5-carboxylate reductase -
  GQ677_RS10090 (GQ677_10090) - 1981678..1981986 (-) 309 WP_010921804.1 hypothetical protein -
  GQ677_RS10095 (GQ677_10095) - 1982173..1983369 (-) 1197 WP_023612537.1 acetate kinase -
  GQ677_RS10100 (GQ677_10100) comGH 1983428..1984381 (-) 954 WP_136274080.1 class I SAM-dependent methyltransferase Machinery gene
  GQ677_RS10105 (GQ677_10105) comGG 1984479..1984805 (-) 327 WP_136274078.1 competence type IV pilus minor pilin ComGG -
  GQ677_RS10110 (GQ677_10110) comGF 1984789..1985223 (-) 435 WP_023612536.1 competence type IV pilus minor pilin ComGF Machinery gene
  GQ677_RS10115 (GQ677_10115) comGE 1985216..1985500 (-) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE Machinery gene
  GQ677_RS10120 (GQ677_10120) comGD 1985457..1985885 (-) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  GQ677_RS10125 (GQ677_10125) comGC 1985860..1986186 (-) 327 WP_032465607.1 competence type IV pilus major pilin ComGC Machinery gene
  GQ677_RS10130 (GQ677_10130) comGB 1986188..1987222 (-) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  GQ677_RS10135 (GQ677_10135) comGA 1987158..1988096 (-) 939 WP_002986557.1 competence type IV pilus ATPase ComGA Machinery gene
  GQ677_RS10140 (GQ677_10140) - 1988189..1988554 (-) 366 WP_002986560.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=357358 GQ677_RS10120 WP_002986548.1 1985457..1985885(-) (comGD) [Streptococcus pyogenes strain 1085]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=357358 GQ677_RS10120 WP_002986548.1 1985457..1985885(-) (comGD) [Streptococcus pyogenes strain 1085]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTAACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366

Multiple sequence alignment