Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   E5Y90_RS12440 Genome accession   NZ_CP039143
Coordinates   2624181..2624900 (-) Length   239 a.a.
NCBI ID   WP_151205181.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2619181..2629900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS12420 (E5Y90_12470) aroB 2619778..2620863 (-) 1086 WP_174660343.1 3-dehydroquinate synthase -
  E5Y90_RS12425 (E5Y90_12475) aroK 2620890..2621426 (-) 537 WP_151205184.1 shikimate kinase AroK -
  E5Y90_RS12430 (E5Y90_12480) pilQ 2621463..2623637 (-) 2175 WP_174660344.1 type IV pilus secretin PilQ family protein Machinery gene
  E5Y90_RS12435 (E5Y90_12485) pilP 2623654..2624181 (-) 528 WP_151205182.1 pilus assembly protein PilP Machinery gene
  E5Y90_RS12440 (E5Y90_12490) pilO 2624181..2624900 (-) 720 WP_151205181.1 type 4a pilus biogenesis protein PilO Machinery gene
  E5Y90_RS12445 (E5Y90_12495) comN 2624897..2625535 (-) 639 WP_174660345.1 PilN domain-containing protein Machinery gene
  E5Y90_RS12450 (E5Y90_12500) pilM 2625535..2626593 (-) 1059 WP_151205179.1 pilus assembly protein PilM Machinery gene
  E5Y90_RS12455 (E5Y90_12505) ponA 2626760..2629303 (+) 2544 WP_174660346.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27297.84 Da        Isoelectric Point: 4.5937

>NTDB_id=357219 E5Y90_RS12440 WP_151205181.1 2624181..2624900(-) (pilO) [Acinetobacter sp. 10FS3-1]
MSNQEFDEFSQETVAVPRKKMTVEKFFQQFNTLDPNNYGSWPLSVKISCWIFIIVLIFMLVYFIVIRSTIESISQANAQE
QNLLNEFREKESKLRNLQQYQIQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNSGLKFKNIRLEPEVKQEFFIEQP
IAIEATGDYHAFGSFVSSIAGLSRIVTLHDFTISGTESQEKKSEIPVIDYIVKAKTYRYVGNSDDASSPTNNASTTGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=357219 E5Y90_RS12440 WP_151205181.1 2624181..2624900(-) (pilO) [Acinetobacter sp. 10FS3-1]
ATGAGTAATCAAGAATTTGATGAGTTCAGCCAAGAGACAGTGGCTGTTCCTAGAAAAAAAATGACGGTTGAAAAGTTCTT
TCAGCAGTTTAATACCCTGGACCCGAATAATTACGGTAGCTGGCCTTTATCGGTCAAGATTAGCTGCTGGATTTTTATTA
TCGTCCTGATTTTTATGCTGGTGTATTTTATTGTGATTCGCAGCACCATTGAATCGATTTCGCAGGCCAATGCGCAGGAA
CAGAACCTGCTCAATGAGTTCCGTGAAAAAGAATCTAAATTGCGTAATTTGCAGCAGTATCAGATTCAGTTACAGGAAAT
GGAAGCACGTTTTAACCAGCAGTTAGAACAGTTGCCTAAAGAAACTGAAATTCCGGGACTGGTCGAAGATATTAACCTGA
GTGGAGTGAACTCTGGTTTAAAATTCAAAAATATTCGTCTGGAGCCTGAAGTTAAGCAAGAATTCTTTATTGAACAGCCC
ATCGCTATTGAGGCCACTGGGGACTATCACGCATTTGGTTCTTTTGTCAGCAGCATTGCCGGTCTATCCCGGATTGTAAC
GCTGCATGATTTCACTATTAGCGGTACTGAAAGCCAGGAAAAGAAATCTGAAATTCCTGTGATTGACTATATCGTTAAAG
CCAAGACTTATCGTTATGTTGGGAATAGTGATGATGCCTCATCCCCAACGAATAACGCCAGTACCACGGGGGCTCAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

68.201

100

0.682
  comO Acinetobacter baylyi ADP1

68.067

99.582

0.678

Multiple sequence alignment