Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   E5Y90_RS12435 Genome accession   NZ_CP039143
Coordinates   2623654..2624181 (-) Length   175 a.a.
NCBI ID   WP_151205182.1    Uniprot ID   -
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2618654..2629181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS12415 (E5Y90_12465) - 2618920..2619771 (-) 852 WP_174660342.1 hypothetical protein -
  E5Y90_RS12420 (E5Y90_12470) aroB 2619778..2620863 (-) 1086 WP_174660343.1 3-dehydroquinate synthase -
  E5Y90_RS12425 (E5Y90_12475) aroK 2620890..2621426 (-) 537 WP_151205184.1 shikimate kinase AroK -
  E5Y90_RS12430 (E5Y90_12480) pilQ 2621463..2623637 (-) 2175 WP_174660344.1 type IV pilus secretin PilQ family protein Machinery gene
  E5Y90_RS12435 (E5Y90_12485) pilP 2623654..2624181 (-) 528 WP_151205182.1 pilus assembly protein PilP Machinery gene
  E5Y90_RS12440 (E5Y90_12490) pilO 2624181..2624900 (-) 720 WP_151205181.1 type 4a pilus biogenesis protein PilO Machinery gene
  E5Y90_RS12445 (E5Y90_12495) comN 2624897..2625535 (-) 639 WP_174660345.1 PilN domain-containing protein Machinery gene
  E5Y90_RS12450 (E5Y90_12500) pilM 2625535..2626593 (-) 1059 WP_151205179.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19367.55 Da        Isoelectric Point: 6.4728

>NTDB_id=357218 E5Y90_RS12435 WP_151205182.1 2623654..2624181(-) (pilP) [Acinetobacter sp. 10FS3-1]
MNIIKMTSALTLGFLLAGCESRIDLVNQEMANIRNQPPLPIEPAPDFMPVETFNYAAHSLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGTMRNQAGQILALMQTPDGEIERIQRGSYMGLNHGRVVNITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=357218 E5Y90_RS12435 WP_151205182.1 2623654..2624181(-) (pilP) [Acinetobacter sp. 10FS3-1]
ATGAATATCATTAAAATGACATCGGCCTTGACCCTTGGTTTTTTACTGGCAGGCTGTGAGTCCAGAATTGATCTGGTCAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCTTTACCGATTGAGCCTGCGCCAGACTTTATGCCTGTAGAAACGTTTA
ATTATGCAGCCCATTCACTAAAAAGCCCTTTTTTACCAAGCTCACTGGCAGCTGAACTAAAAATTATGGCAGGTAAGCGG
GTTTATCCGAATTTATCACGTCAATTACAGCCATTGGAAAGTTATCCGCTGGAAACCTTGAGCATGAAAGGGACAATGAG
AAATCAGGCAGGACAGATTCTGGCTCTGATGCAAACTCCGGATGGCGAAATTGAGCGGATACAGCGGGGCAGTTATATGG
GGCTGAATCATGGTCGGGTGGTTAATATTACACCCACTCAGATCGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGG
TATGTGGAACGACCACGAAGTCTGGTTCTGATCGGACCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

74.286

100

0.743
  comL Acinetobacter baylyi ADP1

70.414

96.571

0.68

Multiple sequence alignment