Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   E5Y90_RS12430 Genome accession   NZ_CP039143
Coordinates   2621463..2623637 (-) Length   724 a.a.
NCBI ID   WP_174660344.1    Uniprot ID   A0A6N0LJJ1
Organism   Acinetobacter sp. 10FS3-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2616463..2628637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Y90_RS12415 (E5Y90_12465) - 2618920..2619771 (-) 852 WP_174660342.1 hypothetical protein -
  E5Y90_RS12420 (E5Y90_12470) aroB 2619778..2620863 (-) 1086 WP_174660343.1 3-dehydroquinate synthase -
  E5Y90_RS12425 (E5Y90_12475) aroK 2620890..2621426 (-) 537 WP_151205184.1 shikimate kinase AroK -
  E5Y90_RS12430 (E5Y90_12480) pilQ 2621463..2623637 (-) 2175 WP_174660344.1 type IV pilus secretin PilQ family protein Machinery gene
  E5Y90_RS12435 (E5Y90_12485) pilP 2623654..2624181 (-) 528 WP_151205182.1 pilus assembly protein PilP Machinery gene
  E5Y90_RS12440 (E5Y90_12490) pilO 2624181..2624900 (-) 720 WP_151205181.1 type 4a pilus biogenesis protein PilO Machinery gene
  E5Y90_RS12445 (E5Y90_12495) comN 2624897..2625535 (-) 639 WP_174660345.1 PilN domain-containing protein Machinery gene
  E5Y90_RS12450 (E5Y90_12500) pilM 2625535..2626593 (-) 1059 WP_151205179.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 724 a.a.        Molecular weight: 78870.17 Da        Isoelectric Point: 4.9617

>NTDB_id=357217 E5Y90_RS12430 WP_174660344.1 2621463..2623637(-) (pilQ) [Acinetobacter sp. 10FS3-1]
MNKSMKEFIFGDANTMTHVFRQFSMGAVAIAVMQAASAQVALTNVVAMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDQAQQNLKQAHIPVATAEANSVDVSSDAERARLTVNLAKAGAFTTRTEGNTFILKINSASSLATVQPVIEQQKVAQG
ISNISFQRGSQGEGQVVIDLAGSNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQS
GESYEYMAYQTDNRLTISLKRPEAKSPLRPKEMTYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKD
VPWDQALDIVLKTKNLDKRRNDNVIWIAPVTELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAVEIEKLITQNKGSSN
SGSSTGSNNNDDKESLLSSRGSVSIDARTNTLIVNDTQAFIDKIRNLVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWG
ILSQGITNNNHLLVGGSDTTIWDLREPELDSETGRWTYDIQRPDNLNVDLGVTSPGASRIAFGLISLSDFMLDLELSALQ
ADGYGEVISTPKVMTADKQKAIVTSGSQIPYQSAEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNP
TPTGQLTINKNQINTNVLVGDGETVVLGGIFEQETRNAQTKVPFLGDIPYLGRLFRKDLKSDNKRELLIFVTPRIVNDSV
SRNH

Nucleotide


Download         Length: 2175 bp        

>NTDB_id=357217 E5Y90_RS12430 WP_174660344.1 2621463..2623637(-) (pilQ) [Acinetobacter sp. 10FS3-1]
ATGAATAAGAGTATGAAAGAATTTATTTTTGGGGATGCTAATACAATGACTCATGTGTTTCGTCAGTTTTCAATGGGGGC
TGTAGCGATTGCGGTCATGCAGGCAGCAAGCGCACAGGTGGCCTTGACCAATGTGGTCGCAATGCAGATTCCTGGACAAG
GTACAGAAATTCGGGTCATGTTCAATGGTTTGCCACCGCAACCACAAGCGTATCAGTTGGAATCTCCTTCCCGGCTCATT
CTGGATTTTGATCAGGCCCAGCAAAATCTTAAACAGGCCCATATTCCGGTCGCTACAGCTGAAGCTAATTCCGTGGATGT
CAGCTCGGATGCTGAGCGTGCGCGCTTGACAGTGAACCTGGCTAAAGCAGGGGCGTTCACCACGCGCACTGAAGGTAATA
CCTTTATTCTTAAAATTAATTCGGCCAGCTCGCTAGCAACTGTACAGCCGGTTATAGAACAACAGAAAGTGGCTCAAGGC
ATTAGCAATATCAGTTTCCAGCGTGGTTCCCAAGGTGAAGGCCAGGTGGTGATTGATCTGGCCGGCAGTAATACCCCGGT
AGATGTACAGCAGCAGGGCACTAAAGTCATTGTGCGCACTCTTGGAAGCAAGATTCCTGCGCATTTAACGCGTCGCTTGA
ATGTGAATGATTTCGCTACGCCTGTGTCGACAGTAGATGCTGTTAACCAGAATGGCAGTGGTGTTATTACTATCCAGTCA
GGTGAAAGTTATGAATATATGGCCTATCAGACAGATAACCGGCTGACGATCAGCCTGAAGCGCCCTGAAGCGAAAAGTCC
GCTACGTCCCAAAGAAATGACTTATACGGGCAAGAAAATCTCGCTTGATTTCCAGGATATTGAGGTACGTCGTGTGCTCC
AGCTGCTGGCTGATTTTACCGATATCAATATGGTCGCAGCTGATAGTGTGCAGGGAAATATTACCTTGCGCTTGAAAGAT
GTGCCTTGGGATCAGGCGCTGGACATTGTACTGAAAACCAAAAATCTGGACAAGCGCCGTAATGACAATGTCATCTGGAT
TGCACCGGTTACTGAATTGATCAAAGCTGAGGAAGAAGAGGCCAAAGCCTTAGCGCAAAGCGTAAAATTGGCACCGATTC
AAACGGAATATATGCAGCTCAGTTATGCTAAAGCAGTAGAAATTGAAAAACTGATTACACAAAATAAAGGGTCATCCAAT
TCAGGCAGCTCAACTGGGAGCAACAATAATGATGATAAGGAAAGTTTATTAAGTTCACGTGGTTCTGTTTCTATTGATGC
CCGTACCAATACTTTAATTGTCAATGATACTCAGGCTTTTATTGACAAAATTCGTAACCTGGTTGATCTGCTGGATGTAC
AAGTCAAGCAGGTGATGGTGGAGGCGCGCATCGTAAGGGCCACGACTGACTTTACCAAAGAAATGGGCGTGAAGTGGGGT
ATTCTGTCACAGGGGATTACTAATAATAATCACCTGCTGGTGGGCGGGAGCGATACTACAATATGGGATCTTAGAGAACC
TGAACTCGATAGTGAAACTGGTCGCTGGACTTATGATATTCAACGACCAGATAACCTGAATGTAGACCTGGGAGTCACCA
GCCCTGGTGCCAGCCGGATTGCTTTTGGCCTAATCAGTTTATCTGACTTTATGCTTGACCTTGAGCTTTCTGCCTTGCAG
GCTGACGGTTATGGCGAAGTTATCTCGACGCCTAAAGTCATGACTGCAGACAAGCAAAAAGCGATAGTTACGTCCGGTTC
GCAGATTCCTTATCAGTCTGCAGAAGGGGGCGGTGCGAATGCGGTTTCAACTACCGAGTTTATTGATGCAACCTTAAGTC
TGGATGTAACCCCAAGTATTACCCCAGATGGTAAGGTTCAAATGGAACTGAATATCACCAGTGACTCTCCAGGAAACCCG
ACGCCAACAGGCCAGTTAACGATCAACAAAAATCAGATCAATACCAATGTATTGGTCGGTGATGGAGAAACAGTAGTACT
GGGCGGTATTTTTGAGCAGGAAACCCGTAATGCACAAACCAAGGTTCCATTCCTGGGAGATATTCCGTATTTAGGGCGTT
TATTCCGTAAAGATTTGAAATCGGACAACAAGCGCGAGCTGCTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTT
TCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(55-137)

Secretin and TonB N terminus short domain (STN)

(307-349)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-457)

Bacterial type II and III secretion system protein (Secretin)

(558-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0LJJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.376

100

0.724
  pilQ Acinetobacter baumannii strain A118

72.238

100

0.722
  comQ Acinetobacter baylyi ADP1

69.693

98.895

0.689
  pilQ Pseudomonas aeruginosa PAK

40.638

99.586

0.405
  pilQ Legionella pneumophila strain Lp02

36.864

97.79

0.36

Multiple sequence alignment