Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E5093_RS01070 Genome accession   NZ_CP039031
Coordinates   231412..232902 (-) Length   496 a.a.
NCBI ID   WP_177155244.1    Uniprot ID   -
Organism   Acinetobacter indicus strain yy_1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 226412..237902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5093_RS01045 (E5093_01050) - 226854..227240 (-) 387 WP_177156181.1 hypothetical protein -
  E5093_RS01050 (E5093_01055) - 227344..227745 (+) 402 WP_005181530.1 MAPEG family protein -
  E5093_RS01055 (E5093_01060) ppa 227863..228387 (+) 525 WP_005181532.1 inorganic diphosphatase -
  E5093_RS01060 (E5093_01065) - 228489..229817 (-) 1329 WP_168384661.1 OprD family outer membrane porin -
  E5093_RS01065 (E5093_01070) - 230577..231338 (+) 762 WP_045795372.1 TorF family putative porin -
  E5093_RS01070 (E5093_01075) comM 231412..232902 (-) 1491 WP_177155244.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E5093_RS01075 (E5093_01080) - 232972..233199 (-) 228 WP_075167845.1 accessory factor UbiK family protein -
  E5093_RS01080 (E5093_01085) glnK 233476..233814 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  E5093_RS01085 (E5093_01090) - 233877..235280 (+) 1404 WP_005181548.1 ammonium transporter -
  E5093_RS01090 (E5093_01095) nrdR 235420..235878 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  E5093_RS01095 (E5093_01100) ribD 235902..236990 (+) 1089 WP_177155245.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54091.04 Da        Isoelectric Point: 7.5671

>NTDB_id=356818 E5093_RS01070 WP_177155244.1 231412..232902(-) (comM) [Acinetobacter indicus strain yy_1]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLQAHELHDKTAVE
NSDTVRQRVIQAYERQMQRQGMLNMNLSPKQLEQFAALATPAQNMMDLAQQRLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRTQSSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=356818 E5093_RS01070 WP_177155244.1 231412..232902(-) (comM) [Acinetobacter indicus strain yy_1]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCATCTATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTCCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCTCCGGCCGATTTGCCCAAAGATGGTTCGCGT
CTGGATTTACCGATTGCCTTAGGCATTTTGATTGCTTCCGGACAATTGCCCGAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAGTTACGTCCGGTCACCGGGACTTTAAGTATTGCCATTGCCTGTCAGGCAGCTGGCC
ATCAACTGGTATTACCGGAACCCAATGCGCAGGAAGCCGCACAACTGCCTGACTTTCAGGTGTTTGCAGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCCCTACAGCCTTTTGCAGCAAGCTCGGAAACCCGCTTGGAGCGCTA
TGCTTTTGACCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGTGCCCTGGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATTTATTCAATTGCCAATACCCCGCATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCGCTGGTCGGTGGTGGCTCACATCCAAAACCGGGCGAAATTACCCTGGCCCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAGGAA
ATTGTAATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAATGTTCCGCAGAAAGTATTAAACGCTACCAGAACCGGATTTCTGGCC
CACTCCTGGACCGGATTGATTTGCATATTGATGTACCACCATTACAGGCCCATGAGTTACATGATAAAACTGCGGTGGAA
AACTCAGATACGGTTCGCCAGCGGGTGATTCAGGCCTATGAACGGCAAATGCAACGCCAAGGTATGCTGAATATGAACTT
AAGTCCAAAACAGCTGGAACAGTTTGCTGCCTTAGCCACACCAGCACAGAACATGATGGATCTGGCCCAGCAGCGCTTAA
ACCTGTCGGCTCGCGCCTATCATCGGGTCTTAAGAGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAGATTCAA
ACTGCTCATTTATCGGAAGCGCTGTCTTATCGGACACAGTCCAGCCCATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila strain ERS1305867

50.806

100

0.508
  comM Legionella pneumophila str. Paris

50.806

100

0.508
  comM Vibrio cholerae strain A1552

50.707

99.798

0.506
  comM Haemophilus influenzae Rd KW20

49.8

100

0.502
  comM Vibrio campbellii strain DS40M4

50.101

99.798

0.5
  comM Glaesserella parasuis strain SC1401

49.699

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.47

Multiple sequence alignment