Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal026_RS15725 | Genome accession | NZ_CP038937 |
| Coordinates | 3036678..3038183 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-026 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2991963..3054004 | 3036678..3038183 | within | 0 |
Gene organization within MGE regions
Location: 2991963..3054004
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal026_RS15540 (Psal026_03124) | - | 2991963..2992937 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal026_RS15545 (Psal026_03125) | - | 2993013..2994032 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal026_RS15550 (Psal026_03126) | - | 2994431..2994640 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal026_RS15555 | - | 2995515..2996584 (+) | 1070 | Protein_3092 | IS481 family transposase | - |
| Psal026_RS15560 (Psal026_03129) | - | 2996632..2997693 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal026_RS15565 (Psal026_03130) | - | 2997774..2998082 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal026_RS15570 (Psal026_03131) | - | 2998197..2999513 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal026_RS15575 (Psal026_03132) | - | 2999975..3001192 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal026_RS15580 (Psal026_03133) | - | 3001334..3002230 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal026_RS15585 (Psal026_03134) | - | 3002317..3003315 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal026_RS15590 (Psal026_03135) | aroK | 3003424..3003948 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal026_RS15595 (Psal026_03136) | pilQ | 3004196..3005455 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal026_RS18305 | - | 3005701..3005844 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal026_RS15600 (Psal026_03137) | - | 3005982..3006455 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal026_RS15605 (Psal026_03138) | - | 3006452..3006967 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal026_RS15610 (Psal026_03139) | - | 3006964..3007776 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal026_RS15615 (Psal026_03140) | - | 3007777..3008352 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal026_RS15620 (Psal026_03141) | - | 3008298..3008663 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal026_RS15625 (Psal026_03142) | - | 3008928..3011258 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal026_RS15630 (Psal026_03143) | - | 3011379..3013394 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal026_RS15635 (Psal026_03144) | - | 3013578..3016970 (+) | 3393 | WP_075274967.1 | hypothetical protein | - |
| Psal026_RS15640 (Psal026_03145) | - | 3017035..3017340 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal026_RS15645 (Psal026_03146) | - | 3017510..3018610 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal026_RS15650 (Psal026_03147) | - | 3019005..3020114 (+) | 1110 | WP_129556605.1 | hypothetical protein | - |
| Psal026_RS15655 (Psal026_03148) | - | 3020297..3020626 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal026_RS15660 (Psal026_03149) | asnS | 3021053..3022450 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal026_RS15665 (Psal026_03150) | trbB | 3022570..3023517 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal026_RS15670 (Psal026_03151) | - | 3023514..3024029 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal026_RS15675 (Psal026_03152) | - | 3024016..3025215 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal026_RS15680 (Psal026_03153) | - | 3025212..3025520 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal026_RS15685 (Psal026_03154) | - | 3025537..3026769 (-) | 1233 | WP_230383333.1 | TrbI/VirB10 family protein | - |
| Psal026_RS15690 (Psal026_03155) | - | 3026766..3027809 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal026_RS15695 (Psal026_03156) | trbF | 3027809..3028492 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal026_RS15700 (Psal026_03157) | trbE | 3028489..3030978 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal026_RS15705 (Psal026_03158) | - | 3030995..3031249 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal026_RS15710 (Psal026_03159) | - | 3031250..3031543 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal026_RS15715 (Psal026_03160) | - | 3032392..3033549 (+) | 1158 | WP_032126705.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| Psal026_RS15720 (Psal026_03161) | - | 3033569..3036676 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal026_RS15725 (Psal026_03162) | comM | 3036678..3038183 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal026_RS15730 (Psal026_03163) | - | 3038211..3038492 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal026_RS15735 (Psal026_03164) | - | 3038641..3038982 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal026_RS15740 (Psal026_03165) | speA | 3039102..3040982 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal026_RS15745 (Psal026_03166) | - | 3041067..3042665 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal026_RS15750 (Psal026_03167) | - | 3042683..3043798 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal026_RS15755 (Psal026_03168) | aroF | 3043926..3044924 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal026_RS15760 (Psal026_03169) | trpA | 3044928..3045686 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal026_RS15765 (Psal026_03170) | trpB | 3045688..3046887 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal026_RS15770 (Psal026_03171) | - | 3046871..3047542 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal026_RS15775 (Psal026_03172) | - | 3047564..3048340 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal026_RS15780 (Psal026_03173) | trpD | 3048344..3049366 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal026_RS15785 (Psal026_03174) | - | 3049344..3049922 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal026_RS15790 (Psal026_03175) | - | 3049919..3051388 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal026_RS15795 (Psal026_03176) | trpR | 3051432..3051719 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal026_RS15800 (Psal026_03177) | - | 3051920..3052516 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal026_RS15805 (Psal026_03178) | - | 3052822..3053187 (+) | 366 | WP_196213776.1 | IS630 transposase-related protein | - |
| Psal026_RS15810 (Psal026_03179) | - | 3053252..3053407 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal026_RS15815 (Psal026_03180) | - | 3053552..3054004 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356392 Psal026_RS15725 WP_016209723.1 3036678..3038183(-) (comM) [Piscirickettsia salmonis strain Psal-026]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356392 Psal026_RS15725 WP_016209723.1 3036678..3038183(-) (comM) [Piscirickettsia salmonis strain Psal-026]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |