Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal025_RS15780 | Genome accession | NZ_CP038932 |
| Coordinates | 3050112..3051617 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-025 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3005397..3067439 | 3050112..3051617 | within | 0 |
Gene organization within MGE regions
Location: 3005397..3067439
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal025_RS15590 (Psal025_03127) | - | 3005397..3006371 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal025_RS15595 (Psal025_03128) | - | 3006447..3007466 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal025_RS15605 (Psal025_03129) | - | 3007865..3008074 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal025_RS15610 | - | 3008949..3010018 (+) | 1070 | Protein_3103 | IS481 family transposase | - |
| Psal025_RS15615 (Psal025_03132) | - | 3010066..3011127 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal025_RS15620 (Psal025_03133) | - | 3011208..3011516 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal025_RS15625 (Psal025_03134) | - | 3011631..3012947 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal025_RS15630 (Psal025_03135) | - | 3013409..3014626 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal025_RS15635 (Psal025_03136) | - | 3014768..3015664 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal025_RS15640 (Psal025_03137) | - | 3015751..3016749 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal025_RS15645 (Psal025_03138) | aroK | 3016858..3017382 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal025_RS15650 (Psal025_03139) | pilQ | 3017630..3018889 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal025_RS19120 | - | 3019135..3019278 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal025_RS15655 (Psal025_03140) | - | 3019416..3019889 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal025_RS15660 (Psal025_03141) | - | 3019886..3020401 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal025_RS15665 (Psal025_03142) | - | 3020398..3021150 (-) | 753 | WP_196214287.1 | hypothetical protein | - |
| Psal025_RS15670 (Psal025_03143) | - | 3021211..3021786 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal025_RS15675 (Psal025_03144) | - | 3021732..3022097 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal025_RS15680 (Psal025_03145) | - | 3022362..3024692 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal025_RS15685 (Psal025_03146) | - | 3024813..3026828 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal025_RS15690 (Psal025_03147) | - | 3027012..3030404 (+) | 3393 | WP_075274967.1 | hypothetical protein | - |
| Psal025_RS15695 (Psal025_03148) | - | 3030469..3030774 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal025_RS15700 (Psal025_03149) | - | 3030944..3032044 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal025_RS15705 (Psal025_03150) | - | 3032292..3033548 (+) | 1257 | WP_155049897.1 | hypothetical protein | - |
| Psal025_RS15710 (Psal025_03151) | - | 3033731..3034033 (-) | 303 | WP_269466442.1 | phospholipase D-like domain-containing protein | - |
| Psal025_RS15715 (Psal025_03152) | asnS | 3034487..3035884 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal025_RS15720 (Psal025_03153) | trbB | 3036004..3036951 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal025_RS15725 (Psal025_03154) | - | 3036948..3037463 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal025_RS15730 (Psal025_03155) | - | 3037450..3038649 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal025_RS15735 (Psal025_03156) | - | 3038646..3038954 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal025_RS15740 (Psal025_03157) | - | 3038971..3040203 (-) | 1233 | WP_230383333.1 | TrbI/VirB10 family protein | - |
| Psal025_RS15745 (Psal025_03158) | - | 3040200..3041243 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal025_RS15750 (Psal025_03159) | trbF | 3041243..3041926 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal025_RS15755 (Psal025_03160) | trbE | 3041923..3044412 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal025_RS15760 (Psal025_03161) | - | 3044429..3044683 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal025_RS15765 (Psal025_03162) | - | 3044684..3044977 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal025_RS15770 (Psal025_03163) | - | 3046000..3046983 (+) | 984 | WP_164997270.1 | efflux RND transporter periplasmic adaptor subunit | - |
| Psal025_RS15775 (Psal025_03164) | - | 3047003..3050110 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal025_RS15780 (Psal025_03165) | comM | 3050112..3051617 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal025_RS15785 (Psal025_03166) | - | 3051645..3051926 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal025_RS15790 (Psal025_03167) | - | 3052075..3052416 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal025_RS15795 (Psal025_03168) | speA | 3052536..3054416 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal025_RS15800 (Psal025_03169) | - | 3054501..3056099 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal025_RS15805 (Psal025_03170) | - | 3056117..3057232 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal025_RS15810 (Psal025_03171) | aroF | 3057360..3058358 (-) | 999 | WP_155069083.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal025_RS15815 (Psal025_03172) | trpA | 3058362..3059120 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal025_RS15820 (Psal025_03173) | trpB | 3059122..3060321 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal025_RS15825 (Psal025_03174) | - | 3060305..3060976 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal025_RS15830 (Psal025_03175) | - | 3060998..3061774 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal025_RS15835 (Psal025_03176) | trpD | 3061778..3062800 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal025_RS15840 (Psal025_03177) | - | 3062778..3063356 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal025_RS15845 (Psal025_03178) | - | 3063353..3064822 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal025_RS15850 (Psal025_03179) | trpR | 3064866..3065153 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal025_RS15855 (Psal025_03180) | - | 3065354..3065950 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal025_RS15860 (Psal025_03181) | - | 3066256..3066630 (+) | 375 | WP_173018591.1 | IS630 transposase-related protein | - |
| Psal025_RS15865 (Psal025_03182) | - | 3066687..3066842 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal025_RS15870 (Psal025_03183) | - | 3066987..3067439 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356377 Psal025_RS15780 WP_016209723.1 3050112..3051617(-) (comM) [Piscirickettsia salmonis strain Psal-025]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356377 Psal025_RS15780 WP_016209723.1 3050112..3051617(-) (comM) [Piscirickettsia salmonis strain Psal-025]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |