Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal011_RS15775 | Genome accession | NZ_CP038923 |
| Coordinates | 3046936..3048441 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-011 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3002221..3064263 | 3046936..3048441 | within | 0 |
Gene organization within MGE regions
Location: 3002221..3064263
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal011_RS15590 (Psal011_03129) | - | 3002221..3003195 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal011_RS15595 (Psal011_03130) | - | 3003271..3004290 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal011_RS15600 (Psal011_03131) | - | 3004689..3004898 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal011_RS15605 | - | 3005773..3006842 (+) | 1070 | Protein_3098 | IS481 family transposase | - |
| Psal011_RS15610 (Psal011_03134) | - | 3006890..3007951 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal011_RS15615 (Psal011_03135) | - | 3008032..3008340 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal011_RS15620 (Psal011_03136) | - | 3008455..3009771 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal011_RS15625 (Psal011_03137) | - | 3010233..3011450 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal011_RS15630 (Psal011_03138) | - | 3011592..3012488 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal011_RS15635 (Psal011_03139) | - | 3012575..3013573 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal011_RS15640 (Psal011_03140) | aroK | 3013682..3014206 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal011_RS15645 (Psal011_03141) | pilQ | 3014454..3015713 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal011_RS18530 | - | 3015959..3016102 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal011_RS15650 (Psal011_03142) | - | 3016240..3016713 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal011_RS15655 (Psal011_03143) | - | 3016710..3017225 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal011_RS15660 (Psal011_03144) | - | 3017222..3018034 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal011_RS15665 (Psal011_03145) | - | 3018035..3018610 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal011_RS15670 (Psal011_03146) | - | 3018556..3018921 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal011_RS15675 (Psal011_03147) | - | 3019186..3021516 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal011_RS15680 (Psal011_03148) | - | 3021637..3023652 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal011_RS15685 (Psal011_03149) | - | 3023836..3027228 (+) | 3393 | WP_075274967.1 | hypothetical protein | - |
| Psal011_RS15690 (Psal011_03150) | - | 3027293..3027598 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal011_RS15695 (Psal011_03151) | - | 3027768..3028868 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal011_RS15700 (Psal011_03152) | - | 3029263..3030372 (+) | 1110 | WP_129556605.1 | hypothetical protein | - |
| Psal011_RS15705 (Psal011_03153) | - | 3030555..3030884 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal011_RS15710 (Psal011_03154) | asnS | 3031311..3032708 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal011_RS15715 (Psal011_03155) | trbB | 3032828..3033775 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal011_RS15720 (Psal011_03156) | - | 3033772..3034287 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal011_RS15725 (Psal011_03157) | - | 3034274..3035473 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal011_RS15730 (Psal011_03158) | - | 3035470..3035778 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal011_RS15735 (Psal011_03159) | - | 3035795..3037024 (-) | 1230 | WP_016209703.1 | TrbI/VirB10 family protein | - |
| Psal011_RS15740 (Psal011_03160) | - | 3037024..3038067 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal011_RS15745 (Psal011_03161) | trbF | 3038067..3038750 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal011_RS15750 (Psal011_03162) | trbE | 3038747..3041236 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal011_RS15755 (Psal011_03163) | - | 3041253..3041507 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal011_RS15760 (Psal011_03164) | - | 3041508..3041801 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal011_RS15765 (Psal011_03165) | - | 3042650..3043807 (+) | 1158 | WP_032126705.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| Psal011_RS15770 (Psal011_03166) | - | 3043827..3046934 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal011_RS15775 (Psal011_03167) | comM | 3046936..3048441 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal011_RS15780 (Psal011_03168) | - | 3048469..3048750 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal011_RS15785 (Psal011_03169) | - | 3048899..3049240 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal011_RS15790 (Psal011_03170) | speA | 3049360..3051240 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal011_RS15795 (Psal011_03171) | - | 3051325..3052923 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal011_RS15800 (Psal011_03172) | - | 3052941..3054056 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal011_RS15805 (Psal011_03173) | aroF | 3054184..3055182 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal011_RS15810 (Psal011_03174) | trpA | 3055186..3055944 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal011_RS15815 (Psal011_03175) | trpB | 3055946..3057145 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal011_RS15820 (Psal011_03176) | - | 3057129..3057800 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal011_RS15825 (Psal011_03177) | - | 3057822..3058598 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal011_RS15830 (Psal011_03178) | trpD | 3058602..3059624 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal011_RS15835 (Psal011_03179) | - | 3059602..3060180 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal011_RS15840 (Psal011_03180) | - | 3060177..3061646 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal011_RS15845 (Psal011_03181) | trpR | 3061690..3061977 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal011_RS15850 (Psal011_03182) | - | 3062178..3062774 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal011_RS15855 (Psal011_03183) | - | 3063080..3063454 (+) | 375 | WP_173018591.1 | IS630 transposase-related protein | - |
| Psal011_RS15860 (Psal011_03184) | - | 3063511..3063666 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal011_RS15865 (Psal011_03185) | - | 3063811..3064263 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356349 Psal011_RS15775 WP_016209723.1 3046936..3048441(-) (comM) [Piscirickettsia salmonis strain Psal-011]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356349 Psal011_RS15775 WP_016209723.1 3046936..3048441(-) (comM) [Piscirickettsia salmonis strain Psal-011]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |