Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VEA_RS03960 Genome accession   NC_013456
Coordinates   831603..832139 (+) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio antiquarius     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 826603..837139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS03945 (VEA_002360) uvrA 826678..829500 (-) 2823 WP_006742330.1 excinuclease ABC subunit UvrA -
  VEA_RS03950 (VEA_002361) galU 829650..830522 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VEA_RS03955 (VEA_002362) qstR 830681..831325 (-) 645 WP_006742331.1 LuxR C-terminal-related transcriptional regulator Regulator
  VEA_RS03960 (VEA_002363) ssb 831603..832139 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  VEA_RS03965 (VEA_002364) csrD 832382..834391 (+) 2010 WP_006742332.1 RNase E specificity factor CsrD -
  VEA_RS03970 (VEA_002365) - 834403..835848 (+) 1446 WP_006742333.1 hypothetical protein -
  VEA_RS03975 (VEA_002366) gspM 835845..836495 (+) 651 WP_006742334.1 type II secretion system protein GspM -
  VEA_RS03980 (VEA_002367) - 836488..836820 (+) 333 WP_012841368.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=35632 VEA_RS03960 WP_012841367.1 831603..832139(+) (ssb) [Vibrio antiquarius]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=35632 VEA_RS03960 WP_012841367.1 831603..832139(+) (ssb) [Vibrio antiquarius]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment