Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VEA_RS03955 Genome accession   NC_013456
Coordinates   830681..831325 (-) Length   214 a.a.
NCBI ID   WP_006742331.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 825681..836325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS03945 (VEA_002360) uvrA 826678..829500 (-) 2823 WP_006742330.1 excinuclease ABC subunit UvrA -
  VEA_RS03950 (VEA_002361) galU 829650..830522 (-) 873 WP_005397418.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VEA_RS03955 (VEA_002362) qstR 830681..831325 (-) 645 WP_006742331.1 LuxR C-terminal-related transcriptional regulator Regulator
  VEA_RS03960 (VEA_002363) ssb 831603..832139 (+) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  VEA_RS03965 (VEA_002364) csrD 832382..834391 (+) 2010 WP_006742332.1 RNase E specificity factor CsrD -
  VEA_RS03970 (VEA_002365) - 834403..835848 (+) 1446 WP_006742333.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24544.50 Da        Isoelectric Point: 9.8575

>NTDB_id=35631 VEA_RS03955 WP_006742331.1 830681..831325(-) (qstR) [Vibrio antiquarius]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSFVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDKLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=35631 VEA_RS03955 WP_006742331.1 830681..831325(-) (qstR) [Vibrio antiquarius]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCAGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCAACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCATTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTTCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATAAGCTAGAGCAAATTGGAGAAGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAATACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGCGCATCGAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAGGCTATCGCGTGGGCAGATCAAAACTTAATGT
CATGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.327

100

0.953
  qstR Vibrio campbellii strain DS40M4

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment