Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal005_RS15855 | Genome accession | NZ_CP038891 |
| Coordinates | 3059976..3061481 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-005 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3015261..3077303 | 3059976..3061481 | within | 0 |
Gene organization within MGE regions
Location: 3015261..3077303
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal005_RS15665 (Psal005_03155) | - | 3015261..3016235 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal005_RS15670 (Psal005_03156) | - | 3016311..3017330 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal005_RS15680 (Psal005_03157) | - | 3017729..3017938 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal005_RS15685 | - | 3018813..3019882 (+) | 1070 | Protein_3115 | IS481 family transposase | - |
| Psal005_RS15690 (Psal005_03160) | - | 3019930..3020991 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal005_RS15695 (Psal005_03161) | - | 3021072..3021380 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal005_RS15700 (Psal005_03162) | - | 3021495..3022811 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal005_RS15705 (Psal005_03163) | - | 3023273..3024490 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal005_RS15710 (Psal005_03164) | - | 3024632..3025528 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal005_RS15715 (Psal005_03165) | - | 3025615..3026613 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal005_RS15720 (Psal005_03166) | aroK | 3026722..3027246 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal005_RS15725 (Psal005_03167) | pilQ | 3027494..3028753 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal005_RS17845 | - | 3028999..3029142 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal005_RS15730 (Psal005_03168) | - | 3029280..3029753 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal005_RS15735 (Psal005_03169) | - | 3029750..3030265 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal005_RS15740 (Psal005_03170) | - | 3030262..3031074 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal005_RS15745 (Psal005_03171) | - | 3031075..3031650 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal005_RS15750 (Psal005_03172) | - | 3031596..3031961 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal005_RS15755 (Psal005_03173) | - | 3032226..3034556 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal005_RS15760 (Psal005_03174) | - | 3034677..3036692 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal005_RS15765 (Psal005_03175) | - | 3036876..3040268 (+) | 3393 | WP_075274967.1 | hypothetical protein | - |
| Psal005_RS15770 (Psal005_03176) | - | 3040333..3040638 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal005_RS15775 (Psal005_03177) | - | 3040808..3041908 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal005_RS15780 (Psal005_03178) | - | 3042303..3043412 (+) | 1110 | WP_129556605.1 | hypothetical protein | - |
| Psal005_RS15785 (Psal005_03179) | - | 3043595..3043924 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal005_RS15790 (Psal005_03180) | asnS | 3044351..3045748 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal005_RS15795 (Psal005_03181) | trbB | 3045868..3046815 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal005_RS15800 (Psal005_03182) | - | 3046812..3047327 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal005_RS15805 (Psal005_03183) | - | 3047314..3048513 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal005_RS15810 (Psal005_03184) | - | 3048510..3048818 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal005_RS15815 (Psal005_03185) | - | 3048835..3050067 (-) | 1233 | WP_230383333.1 | TrbI/VirB10 family protein | - |
| Psal005_RS15820 (Psal005_03186) | - | 3050064..3051107 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal005_RS15825 (Psal005_03187) | trbF | 3051107..3051790 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal005_RS15830 (Psal005_03188) | trbE | 3051787..3054276 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal005_RS15835 (Psal005_03189) | - | 3054293..3054547 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal005_RS15840 (Psal005_03190) | - | 3054548..3054841 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal005_RS18185 | - | 3055773..3055910 (-) | 138 | WP_016209726.1 | hypothetical protein | - |
| Psal005_RS15845 (Psal005_03191) | - | 3055909..3056847 (+) | 939 | WP_016209696.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| Psal005_RS15850 (Psal005_03192) | - | 3056867..3059974 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal005_RS15855 (Psal005_03193) | comM | 3059976..3061481 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal005_RS15860 (Psal005_03194) | - | 3061509..3061790 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal005_RS15865 (Psal005_03195) | - | 3061939..3062280 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal005_RS15870 (Psal005_03196) | speA | 3062400..3064280 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal005_RS15875 (Psal005_03197) | - | 3064365..3065963 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal005_RS15880 (Psal005_03198) | - | 3065981..3067096 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal005_RS15885 (Psal005_03199) | aroF | 3067224..3068222 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal005_RS15890 (Psal005_03200) | trpA | 3068226..3068984 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal005_RS15895 (Psal005_03201) | trpB | 3068986..3070185 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal005_RS15900 (Psal005_03202) | - | 3070169..3070840 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal005_RS15905 (Psal005_03203) | - | 3070862..3071638 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal005_RS15910 (Psal005_03204) | trpD | 3071642..3072664 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal005_RS15915 (Psal005_03205) | - | 3072642..3073220 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal005_RS15920 (Psal005_03206) | - | 3073217..3074686 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal005_RS15925 (Psal005_03207) | trpR | 3074730..3075017 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal005_RS15930 (Psal005_03208) | - | 3075218..3075814 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal005_RS15935 (Psal005_03209) | - | 3076120..3076494 (+) | 375 | WP_173018591.1 | IS630 transposase-related protein | - |
| Psal005_RS15940 (Psal005_03210) | - | 3076551..3076706 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal005_RS15945 (Psal005_03211) | - | 3076851..3077303 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356248 Psal005_RS15855 WP_016209723.1 3059976..3061481(-) (comM) [Piscirickettsia salmonis strain Psal-005]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356248 Psal005_RS15855 WP_016209723.1 3059976..3061481(-) (comM) [Piscirickettsia salmonis strain Psal-005]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |