Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal004_RS15650 | Genome accession | NZ_CP038886 |
| Coordinates | 3025068..3026573 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-004 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2980353..3042395 | 3025068..3026573 | within | 0 |
Gene organization within MGE regions
Location: 2980353..3042395
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal004_RS15465 (Psal004_03104) | - | 2980353..2981327 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal004_RS15470 (Psal004_03105) | - | 2981403..2982422 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal004_RS18645 | - | 2982470..2982616 (-) | 147 | WP_155047000.1 | hypothetical protein | - |
| Psal004_RS15475 (Psal004_03106) | - | 2982821..2983030 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal004_RS15480 | - | 2983905..2984974 (+) | 1070 | Protein_3084 | IS481 family transposase | - |
| Psal004_RS15485 (Psal004_03109) | - | 2985022..2986083 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal004_RS15490 (Psal004_03110) | - | 2986164..2986472 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal004_RS15495 (Psal004_03111) | - | 2986587..2987903 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal004_RS15500 (Psal004_03112) | - | 2988365..2989582 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal004_RS15505 (Psal004_03113) | - | 2989724..2990620 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal004_RS15510 (Psal004_03114) | - | 2990707..2991705 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal004_RS15515 (Psal004_03115) | aroK | 2991814..2992338 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal004_RS15520 (Psal004_03116) | pilQ | 2992586..2993845 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal004_RS18240 | - | 2994091..2994234 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal004_RS15525 (Psal004_03117) | - | 2994372..2994845 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal004_RS15530 (Psal004_03118) | - | 2994842..2995357 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal004_RS15535 (Psal004_03119) | - | 2995354..2996166 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal004_RS15540 (Psal004_03120) | - | 2996167..2996742 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal004_RS15545 (Psal004_03121) | - | 2996688..2997053 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal004_RS15550 (Psal004_03122) | - | 2997318..2999648 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal004_RS15555 (Psal004_03123) | - | 2999769..3001784 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal004_RS15560 (Psal004_03124) | - | 3001968..3005360 (+) | 3393 | WP_075274967.1 | hypothetical protein | - |
| Psal004_RS15565 (Psal004_03125) | - | 3005425..3005730 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal004_RS15570 (Psal004_03126) | - | 3005900..3007000 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal004_RS15575 (Psal004_03127) | - | 3007248..3008504 (+) | 1257 | WP_155049897.1 | hypothetical protein | - |
| Psal004_RS15580 (Psal004_03128) | - | 3008687..3009016 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal004_RS15585 (Psal004_03129) | asnS | 3009443..3010840 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal004_RS15590 (Psal004_03130) | trbB | 3010960..3011907 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal004_RS15595 (Psal004_03131) | - | 3011904..3012419 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal004_RS15600 (Psal004_03132) | - | 3012406..3013605 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal004_RS15605 (Psal004_03133) | - | 3013602..3013910 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal004_RS15610 (Psal004_03134) | - | 3013927..3015156 (-) | 1230 | WP_016209703.1 | TrbI/VirB10 family protein | - |
| Psal004_RS15615 (Psal004_03135) | - | 3015156..3016199 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal004_RS15620 (Psal004_03136) | trbF | 3016199..3016882 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal004_RS15625 (Psal004_03137) | trbE | 3016879..3019368 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal004_RS15630 (Psal004_03138) | - | 3019385..3019639 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal004_RS15635 (Psal004_03139) | - | 3019640..3019933 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal004_RS15640 (Psal004_03140) | - | 3020782..3021939 (+) | 1158 | WP_032126705.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| Psal004_RS15645 (Psal004_03141) | - | 3021959..3025066 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal004_RS15650 (Psal004_03142) | comM | 3025068..3026573 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal004_RS15655 (Psal004_03143) | - | 3026601..3026882 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal004_RS15660 (Psal004_03144) | - | 3027031..3027372 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal004_RS15665 (Psal004_03145) | speA | 3027492..3029372 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal004_RS15670 (Psal004_03146) | - | 3029457..3031055 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal004_RS15675 (Psal004_03147) | - | 3031073..3032188 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal004_RS15680 (Psal004_03148) | aroF | 3032316..3033314 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal004_RS15685 (Psal004_03149) | trpA | 3033318..3034076 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal004_RS15690 (Psal004_03150) | trpB | 3034078..3035277 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal004_RS15695 (Psal004_03151) | - | 3035261..3035932 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal004_RS15700 (Psal004_03152) | - | 3035954..3036730 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal004_RS15705 (Psal004_03153) | trpD | 3036734..3037756 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal004_RS15710 (Psal004_03154) | - | 3037734..3038312 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal004_RS15715 (Psal004_03155) | - | 3038309..3039778 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal004_RS15720 (Psal004_03156) | trpR | 3039822..3040109 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal004_RS15725 (Psal004_03157) | - | 3040310..3040906 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal004_RS15730 (Psal004_03158) | - | 3041212..3041586 (+) | 375 | WP_173018591.1 | IS630 transposase-related protein | - |
| Psal004_RS15735 (Psal004_03159) | - | 3041643..3041798 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal004_RS15740 (Psal004_03160) | - | 3041943..3042395 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356233 Psal004_RS15650 WP_016209723.1 3025068..3026573(-) (comM) [Piscirickettsia salmonis strain Psal-004]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356233 Psal004_RS15650 WP_016209723.1 3025068..3026573(-) (comM) [Piscirickettsia salmonis strain Psal-004]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |