Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VEA_RS02155 Genome accession   NC_013456
Coordinates   451639..453162 (+) Length   507 a.a.
NCBI ID   WP_006742918.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446639..458162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS02140 (VEA_002039) ilvE 448281..449219 (-) 939 WP_005378953.1 branched-chain-amino-acid transaminase -
  VEA_RS02145 (VEA_002040) ilvM 449232..449516 (-) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  VEA_RS02150 (VEA_002041) ilvG 449528..451174 (-) 1647 WP_005394061.1 acetolactate synthase 2 catalytic subunit -
  VEA_RS02155 (VEA_002042) comM 451639..453162 (+) 1524 WP_006742918.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VEA_RS02160 (VEA_002043) - 453220..454176 (-) 957 WP_006742919.1 DUF2860 domain-containing protein -
  VEA_RS02165 (VEA_002044) - 454326..455204 (+) 879 WP_006742920.1 acyltransferase -
  VEA_RS02170 (VEA_002045) - 455251..455853 (-) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  VEA_RS02175 (VEA_002046) - 455888..456874 (-) 987 WP_041853008.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55047.16 Da        Isoelectric Point: 8.7823

>NTDB_id=35622 VEA_RS02155 WP_006742918.1 451639..453162(+) (comM) [Vibrio antiquarius]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKIVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKERVNHARTNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=35622 VEA_RS02155 WP_006742918.1 451639..453162(+) (comM) [Vibrio antiquarius]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATTAGCAA
TGGTATGCCCGGGTTTACCTTGGTAGGGCTGCCAGAGACGACGGTAAAAGAGTCCAAAGATCGCGTTCGTAGCGCGATCA
TTAATTCTAATTTTCAGTTTCCAGCTAAGCGGATCACCGTTAATTTAGCTCCAGCAGATTTGCCCAAAGAGGGAGGGCGT
TTTGATCTTCCTATCGCATTGGGCATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGCGAGTTAGCGCTATCTGGTGGTCTGAGGCCAGTAAAAGGTGTGTTACCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTGGTCGTCCCACATGTCAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGTCAACATAGACTGAATCTTTTTCAAACGCCTAAGCGCAAAATAGTCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAACGCGCATTGGAGATAGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACCATGTTGGCTTCGCGTTTGTGTGACTTACTACCGGAGATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCACAATTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTTGGCGGTGGCTCGGTACCCAGACCCGGGGAGATTTCTTTAG
CCCACAACGGCTTGTTGTTTCTCGACGAAATGCCCGAATTTGACCGAAAGGTGCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGTGAGATCATTATCTCTCGGGCGCAAGGTAAAACACGTTTTCCGGCTCGCTTCCAATTAGTTGGAGCATTGAACCC
AAGCCCGACAGGATATTACGAAGGCAATCAAGCTCGCACCAATCCACAAGCTATTTTGCGTTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGAACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACCGCTATCGTTAAAGAACGTGTGAATCATGCGCGTACCAATATGTTGAACCGCAGCGGTAAGGTAAATGC
ACTATTAGGTAGTCGAGAAATCGAGGCGTTTTGCCCCTTACACAAAAGTGATGCGGAGTTTCTTGAAACCGCTTTGCATC
GTTTGGGGCTTTCGATTCGCGCGTATCATCGCATTATCAAAGTAGCACGAACGATAGCGGATCTTGATGGGGCGGAGCAG
ATTGAACGAGCGCACTTAGCCGAGGCGCTTGGGTATCGAGCGATGGATCGCTTACTGAAACAGCTCACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.675

100

0.947
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment