Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal003_RS15685 | Genome accession | NZ_CP038881 |
| Coordinates | 3025854..3027359 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-003 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2981301..3043181 | 3025854..3027359 | within | 0 |
Gene organization within MGE regions
Location: 2981301..3043181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal003_RS15495 (Psal003_03112) | - | 2981301..2982275 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal003_RS15500 (Psal003_03113) | - | 2982351..2983370 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal003_RS15510 (Psal003_03114) | - | 2983769..2983978 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal003_RS15515 | - | 2984853..2985922 (+) | 1070 | Protein_3087 | IS481 family transposase | - |
| Psal003_RS15520 (Psal003_03117) | - | 2985970..2987031 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal003_RS15525 (Psal003_03118) | - | 2987112..2987420 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal003_RS15530 (Psal003_03119) | - | 2987535..2988851 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal003_RS15535 (Psal003_03120) | - | 2989313..2990530 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal003_RS15540 (Psal003_03121) | - | 2990672..2991568 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal003_RS15545 (Psal003_03122) | - | 2991655..2992653 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal003_RS15550 (Psal003_03123) | aroK | 2992762..2993286 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal003_RS15555 (Psal003_03124) | pilQ | 2993534..2994793 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal003_RS18260 | - | 2995039..2995182 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal003_RS15560 (Psal003_03125) | - | 2995320..2995793 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal003_RS15565 (Psal003_03126) | - | 2995790..2996305 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal003_RS15570 (Psal003_03127) | - | 2996302..2997114 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal003_RS15575 (Psal003_03128) | - | 2997115..2997690 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal003_RS15580 (Psal003_03129) | - | 2997636..2998001 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal003_RS15585 (Psal003_03130) | - | 2998266..3000596 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal003_RS15590 (Psal003_03131) | - | 3000717..3002732 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal003_RS15595 (Psal003_03132) | - | 3002916..3006146 (+) | 3231 | WP_155062497.1 | hypothetical protein | - |
| Psal003_RS15600 (Psal003_03133) | - | 3006211..3006516 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal003_RS15605 (Psal003_03134) | - | 3006686..3007786 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal003_RS15610 (Psal003_03135) | - | 3008181..3009290 (+) | 1110 | WP_129556605.1 | hypothetical protein | - |
| Psal003_RS15615 (Psal003_03136) | - | 3009473..3009802 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal003_RS15620 (Psal003_03137) | asnS | 3010229..3011626 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal003_RS15625 (Psal003_03138) | trbB | 3011746..3012693 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal003_RS15630 (Psal003_03139) | - | 3012690..3013205 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal003_RS15635 (Psal003_03140) | - | 3013192..3014391 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal003_RS15640 (Psal003_03141) | - | 3014388..3014696 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal003_RS15645 (Psal003_03142) | - | 3014713..3015942 (-) | 1230 | WP_016209703.1 | TrbI/VirB10 family protein | - |
| Psal003_RS15650 (Psal003_03143) | - | 3015942..3016985 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal003_RS15655 (Psal003_03144) | trbF | 3016985..3017668 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal003_RS15660 (Psal003_03145) | trbE | 3017665..3020154 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal003_RS15665 (Psal003_03146) | - | 3020171..3020425 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal003_RS15670 (Psal003_03147) | - | 3020426..3020719 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal003_RS15675 (Psal003_03148) | - | 3021742..3022725 (+) | 984 | WP_164997270.1 | efflux RND transporter periplasmic adaptor subunit | - |
| Psal003_RS15680 (Psal003_03149) | - | 3022745..3025852 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal003_RS15685 (Psal003_03150) | comM | 3025854..3027359 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal003_RS15690 (Psal003_03151) | - | 3027387..3027668 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal003_RS15695 (Psal003_03152) | - | 3027817..3028158 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal003_RS15700 (Psal003_03153) | speA | 3028278..3030158 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal003_RS15705 (Psal003_03154) | - | 3030243..3031841 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal003_RS15710 (Psal003_03155) | - | 3031859..3032974 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal003_RS15715 (Psal003_03156) | aroF | 3033102..3034100 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal003_RS15720 (Psal003_03157) | trpA | 3034104..3034862 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal003_RS15725 (Psal003_03158) | trpB | 3034864..3036063 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal003_RS15730 (Psal003_03159) | - | 3036047..3036718 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal003_RS15735 (Psal003_03160) | - | 3036740..3037516 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal003_RS15740 (Psal003_03161) | trpD | 3037520..3038542 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal003_RS15745 (Psal003_03162) | - | 3038520..3039098 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal003_RS15750 (Psal003_03163) | - | 3039095..3040564 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal003_RS15755 (Psal003_03164) | trpR | 3040608..3040895 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal003_RS15760 (Psal003_03165) | - | 3041096..3041692 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal003_RS15765 (Psal003_03166) | - | 3041998..3042372 (+) | 375 | WP_173018591.1 | IS630 transposase-related protein | - |
| Psal003_RS15770 (Psal003_03167) | - | 3042429..3042584 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal003_RS15775 (Psal003_03168) | - | 3042729..3043181 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356218 Psal003_RS15685 WP_016209723.1 3025854..3027359(-) (comM) [Piscirickettsia salmonis strain Psal-003]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356218 Psal003_RS15685 WP_016209723.1 3025854..3027359(-) (comM) [Piscirickettsia salmonis strain Psal-003]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |