Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | Psal002_RS15730 | Genome accession | NZ_CP038876 |
| Coordinates | 3037630..3039135 (-) | Length | 501 a.a. |
| NCBI ID | WP_016209723.1 | Uniprot ID | A0A9Q5VFW7 |
| Organism | Piscirickettsia salmonis strain Psal-002 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2992915..3054957 | 3037630..3039135 | within | 0 |
Gene organization within MGE regions
Location: 2992915..3054957
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal002_RS15545 (Psal002_03126) | - | 2992915..2993889 (-) | 975 | WP_054300271.1 | IS30 family transposase | - |
| Psal002_RS15550 (Psal002_03127) | - | 2993965..2994984 (-) | 1020 | WP_054300164.1 | transposase | - |
| Psal002_RS15555 (Psal002_03128) | - | 2995383..2995592 (-) | 210 | WP_129556602.1 | hypothetical protein | - |
| Psal002_RS15560 | - | 2996467..2997536 (+) | 1070 | Protein_3101 | IS481 family transposase | - |
| Psal002_RS15565 (Psal002_03131) | - | 2997584..2998645 (-) | 1062 | WP_075274966.1 | transposase | - |
| Psal002_RS15570 (Psal002_03132) | - | 2998726..2999034 (-) | 309 | WP_016211201.1 | hypothetical protein | - |
| Psal002_RS15575 (Psal002_03133) | - | 2999149..3000465 (-) | 1317 | WP_016211206.1 | MFS transporter | - |
| Psal002_RS15580 (Psal002_03134) | - | 3000927..3002144 (-) | 1218 | WP_016211208.1 | multidrug effflux MFS transporter | - |
| Psal002_RS15585 (Psal002_03135) | - | 3002286..3003182 (+) | 897 | WP_016211205.1 | LysR family transcriptional regulator | - |
| Psal002_RS15590 (Psal002_03136) | - | 3003269..3004267 (-) | 999 | WP_016211203.1 | ATP-binding protein | - |
| Psal002_RS15595 (Psal002_03137) | aroK | 3004376..3004900 (-) | 525 | WP_032126430.1 | shikimate kinase AroK | - |
| Psal002_RS15600 (Psal002_03138) | pilQ | 3005148..3006407 (-) | 1260 | WP_016211204.1 | type IV pilus secretin PilQ | - |
| Psal002_RS18675 | - | 3006653..3006796 (+) | 144 | WP_016211207.1 | hypothetical protein | - |
| Psal002_RS15605 (Psal002_03139) | - | 3006934..3007407 (-) | 474 | WP_016212222.1 | hypothetical protein | - |
| Psal002_RS15610 (Psal002_03140) | - | 3007404..3007919 (-) | 516 | WP_016212225.1 | PilN domain-containing protein | - |
| Psal002_RS15615 (Psal002_03141) | - | 3007916..3008728 (-) | 813 | WP_016212223.1 | hypothetical protein | - |
| Psal002_RS15620 (Psal002_03142) | - | 3008729..3009304 (-) | 576 | WP_075273327.1 | IS630 family transposase | - |
| Psal002_RS15625 (Psal002_03143) | - | 3009250..3009615 (-) | 366 | WP_032126362.1 | IS630 transposase-related protein | - |
| Psal002_RS15630 (Psal002_03144) | - | 3009880..3012210 (+) | 2331 | WP_016211610.1 | penicillin-binding protein 1A | - |
| Psal002_RS15635 (Psal002_03145) | - | 3012331..3014346 (+) | 2016 | WP_129556603.1 | methyltransferase domain-containing protein | - |
| Psal002_RS15640 (Psal002_03146) | - | 3014530..3017922 (+) | 3393 | WP_075274967.1 | hypothetical protein | - |
| Psal002_RS15645 (Psal002_03147) | - | 3017987..3018292 (+) | 306 | WP_016212386.1 | hypothetical protein | - |
| Psal002_RS15650 (Psal002_03148) | - | 3018462..3019562 (+) | 1101 | WP_075274968.1 | transposase | - |
| Psal002_RS15655 (Psal002_03149) | - | 3019957..3021066 (+) | 1110 | WP_129556605.1 | hypothetical protein | - |
| Psal002_RS15660 (Psal002_03150) | - | 3021249..3021578 (-) | 330 | WP_016212095.1 | phospholipase D-like domain-containing protein | - |
| Psal002_RS15665 (Psal002_03151) | asnS | 3022005..3023402 (-) | 1398 | WP_016209721.1 | asparagine--tRNA ligase | - |
| Psal002_RS15670 (Psal002_03152) | trbB | 3023522..3024469 (-) | 948 | WP_051307313.1 | P-type conjugative transfer ATPase TrbB | - |
| Psal002_RS15675 (Psal002_03153) | - | 3024466..3024981 (-) | 516 | WP_032126703.1 | S26 family signal peptidase | - |
| Psal002_RS15680 (Psal002_03154) | - | 3024968..3026167 (-) | 1200 | WP_016209698.1 | type IV secretion system protein | - |
| Psal002_RS15685 (Psal002_03155) | - | 3026164..3026472 (-) | 309 | WP_230383332.1 | hypothetical protein | - |
| Psal002_RS15690 (Psal002_03156) | - | 3026489..3027721 (-) | 1233 | WP_230383333.1 | TrbI/VirB10 family protein | - |
| Psal002_RS15695 (Psal002_03157) | - | 3027718..3028761 (-) | 1044 | WP_016209722.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| Psal002_RS15700 (Psal002_03158) | trbF | 3028761..3029444 (-) | 684 | WP_129556606.1 | conjugal transfer protein TrbF | - |
| Psal002_RS15705 (Psal002_03159) | trbE | 3029441..3031930 (-) | 2490 | WP_016209720.1 | conjugal transfer protein TrbE | - |
| Psal002_RS15710 (Psal002_03160) | - | 3031947..3032201 (-) | 255 | WP_017377396.1 | VirB3 family type IV secretion system protein | - |
| Psal002_RS15715 (Psal002_03161) | - | 3032202..3032495 (-) | 294 | WP_051307316.1 | TrbC/VirB2 family protein | - |
| Psal002_RS15720 (Psal002_03162) | - | 3033518..3034501 (+) | 984 | WP_164997270.1 | efflux RND transporter periplasmic adaptor subunit | - |
| Psal002_RS15725 (Psal002_03163) | - | 3034521..3037628 (+) | 3108 | WP_016209727.1 | efflux RND transporter permease subunit | - |
| Psal002_RS15730 (Psal002_03164) | comM | 3037630..3039135 (-) | 1506 | WP_016209723.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| Psal002_RS15735 (Psal002_03165) | - | 3039163..3039444 (-) | 282 | WP_016209714.1 | accessory factor UbiK family protein | - |
| Psal002_RS15740 (Psal002_03166) | - | 3039593..3039934 (+) | 342 | WP_016209709.1 | P-II family nitrogen regulator | - |
| Psal002_RS15745 (Psal002_03167) | speA | 3040054..3041934 (+) | 1881 | WP_016209712.1 | biosynthetic arginine decarboxylase | - |
| Psal002_RS15750 (Psal002_03168) | - | 3042019..3043617 (-) | 1599 | WP_059372650.1 | hypothetical protein | - |
| Psal002_RS15755 (Psal002_03169) | - | 3043635..3044750 (-) | 1116 | WP_051307314.1 | glycosyltransferase | - |
| Psal002_RS15760 (Psal002_03170) | aroF | 3044878..3045876 (-) | 999 | WP_016209706.1 | 3-deoxy-7-phosphoheptulonate synthase | - |
| Psal002_RS15765 (Psal002_03171) | trpA | 3045880..3046638 (-) | 759 | WP_016209700.1 | tryptophan synthase subunit alpha | - |
| Psal002_RS15770 (Psal002_03172) | trpB | 3046640..3047839 (-) | 1200 | WP_016209702.1 | tryptophan synthase subunit beta | - |
| Psal002_RS15775 (Psal002_03173) | - | 3047823..3048494 (-) | 672 | WP_016209711.1 | phosphoribosylanthranilate isomerase | - |
| Psal002_RS15780 (Psal002_03174) | - | 3048516..3049292 (-) | 777 | WP_016209710.1 | indole-3-glycerol-phosphate synthase | - |
| Psal002_RS15785 (Psal002_03175) | trpD | 3049296..3050318 (-) | 1023 | WP_230383334.1 | anthranilate phosphoribosyltransferase | - |
| Psal002_RS15790 (Psal002_03176) | - | 3050296..3050874 (-) | 579 | WP_016209697.1 | aminodeoxychorismate/anthranilate synthase component II | - |
| Psal002_RS15795 (Psal002_03177) | - | 3050871..3052340 (-) | 1470 | WP_016209713.1 | anthranilate synthase component I family protein | - |
| Psal002_RS15800 (Psal002_03178) | trpR | 3052384..3052671 (-) | 288 | WP_016209719.1 | trp operon repressor | - |
| Psal002_RS15805 (Psal002_03179) | - | 3052872..3053468 (+) | 597 | WP_016209699.1 | DMT family transporter | - |
| Psal002_RS15810 (Psal002_03180) | - | 3053774..3054148 (+) | 375 | WP_173018591.1 | IS630 transposase-related protein | - |
| Psal002_RS15815 (Psal002_03181) | - | 3054205..3054360 (+) | 156 | WP_155046757.1 | hypothetical protein | - |
| Psal002_RS15820 (Psal002_03182) | - | 3054505..3054957 (+) | 453 | WP_075274971.1 | IS630 family transposase | - |
Sequence
Protein
Download Length: 501 a.a. Molecular weight: 54520.47 Da Isoelectric Point: 7.9377
>NTDB_id=356203 Psal002_RS15730 WP_016209723.1 3037630..3039135(-) (comM) [Piscirickettsia salmonis strain Psal-002]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQIDADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAHFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEVDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQIEVFCSLGQQESNLLTRAIEKFGLSARVYYRLLKVARTIADLEQSTD
IKLQHVQESLAYRSLDRRQSE
Nucleotide
Download Length: 1506 bp
>NTDB_id=356203 Psal002_RS15730 WP_016209723.1 3037630..3039135(-) (comM) [Piscirickettsia salmonis strain Psal-002]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCCGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTGATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGGGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCCAGCATTAGTGCTTTTTTAAAAGGTGAAGGTGATTTAGAACAGGCACATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGCCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCCGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGGTTACCTGGCGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGCTTAACGAGTGCTGAAGTTGATTTATCATGTTGGTTTATCCCTAAATTTGC
CAGCCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCGAAACCGGGTGAAATTTCTCGGGCCC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGATCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGGCAGGTTGATATTATTCGCGCAAGTCACCGGGCCTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAATTGAAGTGTTTTGTTCTCTGGGTCAACAAGAATCGAACTTGCTGACACGGGCAATAGAAA
AGTTTGGCTTATCTGCACGGGTGTATTATCGCTTGTTAAAGGTTGCACGGACCATTGCTGACCTTGAGCAAAGTACAGAC
ATTAAACTGCAGCATGTGCAAGAAAGCTTGGCCTATCGCAGCTTGGATCGACGTCAGAGTGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio cholerae strain A1552 |
53.493 |
100 |
0.535 |
| comM | Haemophilus influenzae Rd KW20 |
53.28 |
100 |
0.535 |
| comM | Glaesserella parasuis strain SC1401 |
53.082 |
100 |
0.533 |
| comM | Vibrio campbellii strain DS40M4 |
53.094 |
100 |
0.531 |
| comM | Legionella pneumophila str. Paris |
51.21 |
99.002 |
0.507 |
| comM | Legionella pneumophila strain ERS1305867 |
51.21 |
99.002 |
0.507 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.654 |
100 |
0.473 |