Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E5138_RS09365 | Genome accession | NZ_CP038875 |
| Coordinates | 2017767..2018267 (+) | Length | 166 a.a. |
| NCBI ID | WP_135938282.1 | Uniprot ID | - |
| Organism | Pasteurella multocida strain FCf83 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2012767..2023267
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5138_RS09345 (E5138_09350) | - | 2013885..2014436 (+) | 552 | WP_110478427.1 | DUF2857 domain-containing protein | - |
| E5138_RS09350 (E5138_09355) | - | 2014597..2015823 (+) | 1227 | WP_135938279.1 | STY4528 family pathogenicity island replication protein | - |
| E5138_RS09355 (E5138_09360) | - | 2016146..2016898 (+) | 753 | WP_135938280.1 | TIGR03761 family integrating conjugative element protein | - |
| E5138_RS09360 (E5138_09365) | - | 2016936..2017424 (+) | 489 | WP_135938281.1 | DUF3158 family protein | - |
| E5138_RS09365 (E5138_09370) | ssb | 2017767..2018267 (+) | 501 | WP_135938282.1 | single-stranded DNA-binding protein | Machinery gene |
| E5138_RS09370 (E5138_09375) | - | 2018349..2018831 (+) | 483 | WP_135938283.1 | hypothetical protein | - |
| E5138_RS09375 (E5138_09380) | - | 2018943..2019869 (+) | 927 | WP_135938284.1 | hypothetical protein | - |
| E5138_RS09385 (E5138_09390) | - | 2020380..2022410 (+) | 2031 | WP_135938286.1 | DNA topoisomerase III | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18475.46 Da Isoelectric Point: 5.2797
>NTDB_id=356189 E5138_RS09365 WP_135938282.1 2017767..2018267(+) (ssb) [Pasteurella multocida strain FCf83]
MAGINKVIIVGNLGAEPEVRTMPNGEAVANISVATSESWIDKNTGEKRELTEWHRIVFYRRQAEVVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPVGQATQVGTAQQGRNQYAQQSQPAYQTPQAQTAASQPAPPPTPDDGFG
DDQIPF
MAGINKVIIVGNLGAEPEVRTMPNGEAVANISVATSESWIDKNTGEKRELTEWHRIVFYRRQAEVVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPVGQATQVGTAQQGRNQYAQQSQPAYQTPQAQTAASQPAPPPTPDDGFG
DDQIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=356189 E5138_RS09365 WP_135938282.1 2017767..2018267(+) (ssb) [Pasteurella multocida strain FCf83]
ATGGCAGGTATCAATAAAGTTATTATCGTGGGTAATCTTGGGGCCGAACCTGAAGTAAGAACAATGCCGAATGGTGAGGC
AGTAGCCAATATTAGTGTCGCCACCAGTGAAAGCTGGATAGATAAGAATACCGGTGAAAAACGTGAATTAACGGAATGGC
ATCGTATTGTTTTTTATCGTCGCCAAGCTGAGGTTGTGGGAGAATATTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGA
CGTTTAAGAACGCGCAAATGGCAAGACCAAAATGGTCAAGATCGATACACCACAGAAATTCAAGGTGATGTGCTTCAAAT
GCTAGATAGTCGTCCAGTTGGGCAGGCAACGCAAGTTGGAACGGCGCAACAAGGTCGTAATCAATATGCTCAACAGAGTC
AGCCTGCTTATCAGACACCACAAGCTCAAACAGCCGCTTCTCAGCCAGCACCGCCGCCTACCCCTGATGATGGTTTTGGC
GATGATCAGATTCCTTTCTGA
ATGGCAGGTATCAATAAAGTTATTATCGTGGGTAATCTTGGGGCCGAACCTGAAGTAAGAACAATGCCGAATGGTGAGGC
AGTAGCCAATATTAGTGTCGCCACCAGTGAAAGCTGGATAGATAAGAATACCGGTGAAAAACGTGAATTAACGGAATGGC
ATCGTATTGTTTTTTATCGTCGCCAAGCTGAGGTTGTGGGAGAATATTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGA
CGTTTAAGAACGCGCAAATGGCAAGACCAAAATGGTCAAGATCGATACACCACAGAAATTCAAGGTGATGTGCTTCAAAT
GCTAGATAGTCGTCCAGTTGGGCAGGCAACGCAAGTTGGAACGGCGCAACAAGGTCGTAATCAATATGCTCAACAGAGTC
AGCCTGCTTATCAGACACCACAAGCTCAAACAGCCGCTTCTCAGCCAGCACCGCCGCCTACCCCTGATGATGGTTTTGGC
GATGATCAGATTCCTTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.736 |
100 |
0.699 |
| ssb | Vibrio cholerae strain A1552 |
54.237 |
100 |
0.578 |
| ssb | Neisseria meningitidis MC58 |
44.828 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
44.828 |
100 |
0.47 |