Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E5134_RS10810 Genome accession   NZ_CP038872
Coordinates   2286167..2286679 (-) Length   170 a.a.
NCBI ID   WP_135953027.1    Uniprot ID   -
Organism   Pasteurella multocida strain FCf71     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2281167..2291679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5134_RS10785 (E5134_10790) - 2281189..2281653 (-) 465 WP_194743054.1 STY4534 family ICE replication protein -
  E5134_RS10790 (E5134_10795) - 2282406..2284436 (-) 2031 WP_065189244.1 DNA topoisomerase III -
  E5134_RS10795 (E5134_10800) - 2284568..2285194 (+) 627 WP_110478422.1 hypothetical protein -
  E5134_RS10800 (E5134_10805) - 2285172..2285465 (-) 294 WP_065189242.1 hypothetical protein -
  E5134_RS10805 (E5134_10810) - 2285605..2286084 (-) 480 WP_065189241.1 hypothetical protein -
  E5134_RS10810 (E5134_10815) ssb 2286167..2286679 (-) 513 WP_135953027.1 single-stranded DNA-binding protein Machinery gene
  E5134_RS10815 (E5134_10820) - 2286857..2287048 (+) 192 WP_065189239.1 hypothetical protein -
  E5134_RS10820 (E5134_10825) - 2287036..2287287 (-) 252 WP_065189238.1 hypothetical protein -
  E5134_RS10825 (E5134_10830) - 2287291..2287983 (-) 693 WP_065189237.1 hypothetical protein -
  E5134_RS10830 (E5134_10835) - 2288284..2288796 (-) 513 WP_065189235.1 DUF3158 family protein -
  E5134_RS10835 (E5134_10840) - 2288837..2289589 (-) 753 WP_035689396.1 TIGR03761 family integrating conjugative element protein -
  E5134_RS10840 (E5134_10845) - 2289841..2291067 (-) 1227 WP_065189234.1 STY4528 family pathogenicity island replication protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19202.22 Da        Isoelectric Point: 5.0100

>NTDB_id=356125 E5134_RS10810 WP_135953027.1 2286167..2286679(-) (ssb) [Pasteurella multocida strain FCf71]
MAGINKVIIVGNLGADPEVRTMPNGEAVSNMSVATSESWIDKNTSEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAGQATQVGAAQQGRNQYAQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDDQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=356125 E5134_RS10810 WP_135953027.1 2286167..2286679(-) (ssb) [Pasteurella multocida strain FCf71]
ATGGCAGGGATTAATAAAGTGATTATCGTGGGGAATCTTGGTGCAGATCCTGAAGTAAGAACAATGCCGAATGGCGAAGC
GGTTTCCAATATGAGTGTGGCAACTAGTGAAAGTTGGATAGATAAGAATACAAGTGAAAAACGTGAATTAACCGAGTGGC
ATCGGATTGTGTTTTATCGTCGTCAAGCTGAGATTGTGGGAGAATATTTACGCAAAGGCTCGAAAGTTTATGTCGAGGGG
CGATTAAGAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGATACACCACAGAAATCCAAGGCGATGTACTTCAAAT
GTTAGATAGCCGTCCTGAGCGCTATCAAGCAGGGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
CGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCGCCTATCCCTGAT
GATGGCTTTGACGATGATCAGATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.202

100

0.659
  ssb Vibrio cholerae strain A1552

54.19

100

0.571
  ssb Neisseria meningitidis MC58

47.191

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.126

100

0.482

Multiple sequence alignment