Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CTCNB1_RS24225 Genome accession   NC_013446
Coordinates   5325004..5325552 (-) Length   182 a.a.
NCBI ID   WP_003064700.1    Uniprot ID   A0A5S4SNL5
Organism   Comamonas thiooxydans     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5320004..5330552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTCNB1_RS24205 (CtCNB1_4758) moaC 5321164..5321634 (+) 471 WP_012840351.1 cyclic pyranopterin monophosphate synthase MoaC -
  CTCNB1_RS25160 (CtCNB1_4759) - 5321628..5323337 (-) 1710 WP_012840352.1 O-antigen ligase family protein -
  CTCNB1_RS25165 (CtCNB1_4760) pilA 5323345..5323779 (-) 435 WP_012840353.1 pilin Machinery gene
  CTCNB1_RS24220 (CtCNB1_4761) - 5323968..5324687 (-) 720 WP_012840354.1 FHA domain-containing protein -
  CTCNB1_RS24225 (CtCNB1_4762) ssb 5325004..5325552 (-) 549 WP_003064700.1 single-stranded DNA-binding protein Machinery gene
  CTCNB1_RS24230 (CtCNB1_4763) - 5325825..5326997 (-) 1173 WP_041744703.1 MFS transporter -
  CTCNB1_RS24235 (CtCNB1_4764) uvrA 5327224..5330292 (+) 3069 WP_012840356.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20057.22 Da        Isoelectric Point: 5.9603

>NTDB_id=35568 CTCNB1_RS24225 WP_003064700.1 5325004..5325552(-) (ssb) [Comamonas thiooxydans]
MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENREATEWHRVVFNGKLAEIVGQYLRKGSQVYVEG
SLRTRKWTDQASGQERYATEIRADAMQMLGSRQGGGQQQGGYGSDDGYGESSYEAPRRQAPAPMQQRPAPAPMQQRPAPA
PMAPPPQRAASGFDDMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=35568 CTCNB1_RS24225 WP_003064700.1 5325004..5325552(-) (ssb) [Comamonas thiooxydans]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATCTGGGTCGTGACCCCGAAATGCGCACCTTCCCCAGCGGCGATCA
GGTGGCCAATGTGACCATCGCCACCACAGACCGCTGGCGCGACAAGAACACCGGCGAAAACCGCGAAGCCACCGAATGGC
ACCGTGTGGTCTTCAACGGCAAACTGGCCGAAATCGTGGGTCAGTACCTGCGCAAAGGCAGCCAGGTCTATGTGGAAGGC
AGCCTGCGCACCCGCAAGTGGACCGACCAGGCCTCCGGCCAGGAACGCTACGCCACCGAAATCCGTGCCGACGCCATGCA
GATGCTGGGCAGCCGCCAGGGCGGTGGTCAGCAGCAAGGCGGCTACGGCAGCGATGATGGCTATGGCGAAAGCAGCTACG
AAGCACCCCGCCGTCAGGCTCCCGCTCCCATGCAGCAGCGCCCCGCACCGGCACCCATGCAGCAGCGTCCTGCTCCCGCA
CCCATGGCTCCTCCCCCCCAGCGCGCAGCTTCGGGGTTTGACGACATGGATGACGACATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4SNL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.886

100

0.571
  ssb Glaesserella parasuis strain SC1401

51.562

100

0.544
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473
  ssb Neisseria meningitidis MC58

44.565

100

0.451

Multiple sequence alignment