Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | BAMTA208_RS13100 | Genome accession | NC_017188 |
| Coordinates | 2596899..2597903 (-) | Length | 334 a.a. |
| NCBI ID | WP_013353043.1 | Uniprot ID | A0A9P1JIP2 |
| Organism | Bacillus amyloliquefaciens TA208 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2591899..2602903
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMTA208_RS13070 (BAMTA208_13600) | - | 2592928..2593584 (-) | 657 | WP_013353038.1 | DUF421 domain-containing protein | - |
| BAMTA208_RS13075 (BAMTA208_13605) | - | 2593751..2594137 (+) | 387 | WP_013353039.1 | TIGR04086 family membrane protein | - |
| BAMTA208_RS13080 (BAMTA208_13610) | yajC | 2594190..2594450 (-) | 261 | WP_003152695.1 | preprotein translocase subunit YajC | - |
| BAMTA208_RS13085 (BAMTA208_13615) | tgt | 2594482..2595624 (-) | 1143 | WP_014470773.1 | tRNA guanosine(34) transglycosylase Tgt | - |
| BAMTA208_RS13090 (BAMTA208_13620) | queA | 2595652..2596680 (-) | 1029 | WP_013353041.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| BAMTA208_RS13095 (BAMTA208_13625) | - | 2596706..2596906 (-) | 201 | WP_013353042.1 | DUF2905 domain-containing protein | - |
| BAMTA208_RS13100 (BAMTA208_13630) | ruvB | 2596899..2597903 (-) | 1005 | WP_013353043.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| BAMTA208_RS13105 (BAMTA208_13635) | ruvA | 2597914..2598519 (-) | 606 | WP_003152683.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| BAMTA208_RS13110 (BAMTA208_13640) | - | 2598654..2599130 (-) | 477 | WP_038463270.1 | intercompartmental signaling factor BofC | - |
| BAMTA208_RS21570 (BAMTA208_13645) | - | 2599296..2599415 (-) | 120 | WP_014470775.1 | hypothetical protein | - |
| BAMTA208_RS13115 (BAMTA208_13650) | - | 2599540..2600133 (-) | 594 | WP_014470776.1 | YhcN/YlaJ family sporulation lipoprotein | - |
| BAMTA208_RS13120 (BAMTA208_13655) | safA | 2600282..2601433 (-) | 1152 | WP_014470777.1 | spore coat assembly protein SafA | - |
| BAMTA208_RS13125 (BAMTA208_13660) | nadA | 2601560..2602663 (-) | 1104 | WP_014470778.1 | quinolinate synthase NadA | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37200.48 Da Isoelectric Point: 4.6703
>NTDB_id=35566 BAMTA208_RS13100 WP_013353043.1 2596899..2597903(-) (ruvB) [Bacillus amyloliquefaciens TA208]
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
MDERLVSSEADSHESIIEQSLRPQNLAQYIGQQKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
MRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLNRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVLSRLEYYTQEELTDIVSRTAEVFEVEIEEAPALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEEIAHDALERLQVDALGLDHIDHKLLMGMIEKFSGGPVGLDTISATIGEEPHTIEDVYEPYLLQIGFLQRTPRGRVVTP
AVYEHFRLEAPACD
Nucleotide
Download Length: 1005 bp
>NTDB_id=35566 BAMTA208_RS13100 WP_013353043.1 2596899..2597903(-) (ruvB) [Bacillus amyloliquefaciens TA208]
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTCGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGACTTCTGCCTTG
ATATCGTTATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAAGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCACTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
ATGGATGAACGGCTCGTTTCAAGTGAAGCAGACAGCCATGAATCAATAATCGAGCAAAGCCTCAGGCCGCAGAACCTCGC
CCAGTACATCGGGCAGCAGAAGGTAAAAGAAAATCTGCGCGTGTTTATCGATGCGGCGAAAATGAGGCAGGAAACGCTTG
ACCACGTTCTTTTATACGGGCCTCCGGGTCTCGGAAAAACAACGCTCGCGTCTATCGTGGCCAATGAGATGGGTGTGGAG
ATGCGGACGACGTCAGGCCCCGCTATCGAAAGACCGGGAGACTTGGCAGCCATTCTGACGGCGCTCGAACCCGGGGATGT
GCTGTTTATAGACGAAATTCACAGACTGAACCGGTCAATCGAAGAAGTGCTGTACCCGGCGATGGAGGACTTCTGCCTTG
ATATCGTTATTGGAAAAGGCCCGTCCGCCCGCTCCGTCCGCCTTGACCTTCCGCCTTTTACGCTGGTAGGAGCGACGACC
AGGGTCGGCTTATTGACCGCGCCGCTCAGAGACCGGTTCGGGGTGCTGTCCCGCCTTGAATACTATACGCAGGAAGAACT
GACAGATATCGTGTCAAGAACGGCTGAAGTATTCGAAGTTGAAATCGAAGAAGCCCCGGCTTTGGAAATCGCCAGACGGT
CAAGGGGAACGCCGCGGGTTGCAAACCGGCTTCTCAGAAGGGTGAGAGATTTTGCCCAAGTGCTAGGTGACAGCCGCATC
ACGGAAGAAATCGCTCACGACGCGCTCGAACGTCTTCAAGTCGACGCACTCGGCCTTGACCATATTGACCATAAGCTGCT
GATGGGCATGATTGAAAAATTCAGCGGCGGTCCCGTCGGCCTTGATACGATTTCCGCGACAATCGGTGAAGAACCGCATA
CAATAGAGGATGTGTACGAACCGTATCTGCTTCAGATCGGATTTCTCCAAAGGACGCCGAGAGGACGGGTCGTGACCCCG
GCTGTGTATGAGCATTTTCGATTGGAGGCACCCGCCTGTGACTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
91.916 |
100 |
0.919 |
| ruvB | Streptococcus pneumoniae TIGR4 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae R6 |
60.736 |
97.605 |
0.593 |
| ruvB | Streptococcus pneumoniae D39 |
60.736 |
97.605 |
0.593 |
| ruvB | Synechocystis sp. PCC 6803 |
58.359 |
98.503 |
0.575 |
| ruvB | Helicobacter pylori 26695 |
52.439 |
98.204 |
0.515 |