Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CTCNB1_RS23095 Genome accession   NC_013446
Coordinates   5080687..5082288 (-) Length   533 a.a.
NCBI ID   WP_012840178.1    Uniprot ID   -
Organism   Comamonas thiooxydans     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5075687..5087288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTCNB1_RS23070 (CtCNB1_4534) - 5075847..5076338 (-) 492 WP_003068209.1 PIN domain-containing protein -
  CTCNB1_RS23075 (CtCNB1_4535) - 5076335..5077633 (-) 1299 WP_003068206.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  CTCNB1_RS23080 (CtCNB1_4536) - 5077813..5078151 (+) 339 WP_039050220.1 tRNA-binding protein -
  CTCNB1_RS23085 (CtCNB1_4537) - 5078209..5079441 (+) 1233 WP_012840176.1 DUF711 family protein -
  CTCNB1_RS23090 (CtCNB1_4538) - 5079577..5080497 (+) 921 WP_012840177.1 aspartyl/asparaginyl beta-hydroxylase domain-containing protein -
  CTCNB1_RS23095 (CtCNB1_4539) rpoN/rpoN1 5080687..5082288 (-) 1602 WP_012840178.1 RNA polymerase factor sigma-54 Machinery gene
  CTCNB1_RS23100 (CtCNB1_4540) lptB 5082434..5083216 (-) 783 WP_012840179.1 LPS export ABC transporter ATP-binding protein -
  CTCNB1_RS23105 (CtCNB1_4541) lptA 5083213..5083869 (-) 657 WP_003068194.1 lipopolysaccharide transport periplasmic protein LptA -
  CTCNB1_RS23110 (CtCNB1_4542) - 5084000..5084650 (-) 651 WP_012840180.1 thiol:disulfide interchange protein DsbA/DsbL -
  CTCNB1_RS23115 (CtCNB1_4543) - 5084811..5085515 (-) 705 WP_012840181.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 59118.37 Da        Isoelectric Point: 4.6610

>NTDB_id=35567 CTCNB1_RS23095 WP_012840178.1 5080687..5082288(-) (rpoN/rpoN1) [Comamonas thiooxydans]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLVDNPFLERAGDEAETAGDAPADVATSASEYSISDGIHAE
RDASQAQQATEAVAETSNPETPETLNWEVDGMDGQDGEWGGESSSEWDTPSASSSTRNRDGDDETDAIDLAREHQSLTDF
LHRQALSLHLGAADTAALRFLIESLSDDGYLEDSLQELAQSLAGDDLEEREELEQHFAIALKLLQSLEPVGVGARDLAEC
LQLQLRDLIRTAEDEGTTEAHMSRLLLAQAICAQPMDLLARRDLRKLTSLCGAREEQLREAMALIARLEPRPGRRFVDVE
RHIVVPDVIVRPLRSGSGRVDFSVQLNPEVMPRLRVHDIYASVLRRHKNSDGHAALQQQLQEARWFIKNIQQRFDTILRV
SEAIVERQKNFFVHGELAMRPLVLRDIADTLGLHESTISRVTTAKYMATPQGTFELKYFFGSGLGTETGGSASSTAVRAL
IKQFVDAEDARKPLSDAKLADMLKEQGIECARRTVAKYREQLKIPTTTLRKAL

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=35567 CTCNB1_RS23095 WP_012840178.1 5080687..5082288(-) (rpoN/rpoN1) [Comamonas thiooxydans]
ATGAAGCCAGGTCTCTCGCTACGCGTTTCGCAGCATTTATCGCTTACGCCGCAGCTGCAGCAATCCATTCAGCTGCTGCA
GCTCTCCACCCTGGAGCTGGCGCAGGAAGTCGAGCAGATGCTGGTCGACAACCCTTTTCTGGAACGTGCGGGCGATGAGG
CAGAAACTGCGGGGGATGCTCCTGCAGATGTAGCTACTAGCGCCAGTGAATACAGTATTTCAGATGGTATTCATGCTGAA
AGAGATGCATCGCAAGCGCAACAAGCTACTGAAGCGGTAGCGGAGACATCAAACCCCGAAACCCCGGAAACGCTGAACTG
GGAGGTCGACGGCATGGACGGCCAGGACGGGGAATGGGGCGGCGAATCCAGCAGCGAGTGGGATACGCCCTCGGCCAGCA
GCTCCACGCGCAACCGCGATGGCGACGACGAAACCGATGCCATCGATCTGGCGCGCGAGCACCAGAGCCTGACCGACTTT
CTGCACCGTCAGGCGCTGAGCCTGCATCTGGGCGCGGCGGACACGGCGGCGCTGCGCTTTCTCATCGAGTCGCTCAGCGA
CGACGGCTATCTCGAGGATTCCCTGCAGGAGCTGGCGCAGAGCCTGGCCGGCGACGACCTGGAAGAGCGCGAGGAGCTGG
AGCAGCACTTTGCCATTGCGCTGAAGCTGCTGCAAAGCCTGGAGCCCGTGGGTGTGGGCGCGCGCGATCTGGCCGAGTGC
CTGCAGCTGCAGCTGCGCGATCTGATCCGCACGGCCGAGGACGAGGGCACGACCGAGGCGCATATGAGCCGGCTGCTGCT
GGCGCAGGCCATCTGTGCCCAGCCCATGGACCTGCTGGCGCGGCGCGATCTGCGCAAGCTCACCAGCCTGTGCGGCGCGC
GCGAGGAACAGCTGCGCGAGGCCATGGCCCTGATCGCCAGGCTGGAGCCGCGTCCGGGGCGCCGCTTTGTCGACGTGGAA
CGCCATATCGTGGTGCCCGATGTCATCGTGCGCCCGCTGCGGTCCGGCTCGGGCCGGGTGGACTTCTCCGTGCAGCTCAA
CCCCGAGGTCATGCCGCGTCTGCGCGTGCACGACATCTATGCCAGCGTGCTGCGCCGCCACAAGAACAGCGACGGCCATG
CGGCGCTGCAGCAGCAGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCTTGCGTGTT
TCCGAAGCCATCGTGGAGCGGCAGAAGAACTTCTTTGTGCATGGCGAGCTGGCCATGCGCCCGCTGGTGCTGCGCGATAT
CGCCGACACGCTGGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCCCAGGGCACTT
TCGAGCTCAAGTATTTCTTCGGTTCGGGCCTGGGCACGGAAACCGGCGGCAGTGCTTCCAGCACGGCCGTGCGTGCGCTG
ATCAAGCAGTTTGTCGATGCCGAAGATGCCAGAAAGCCGCTGTCGGACGCCAAGCTGGCCGATATGCTCAAGGAGCAGGG
CATCGAGTGCGCGCGCCGCACCGTCGCCAAATACCGCGAGCAGCTCAAGATACCGACGACCACGCTGCGCAAGGCGCTGT
AG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(375-531)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(150-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.402

100

0.516

Multiple sequence alignment