Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GPY39_RS11135 Genome accession   NZ_CP046783
Coordinates   2207655..2208119 (+) Length   154 a.a.
NCBI ID   WP_021450016.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1181     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2202655..2213119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY39_RS11120 pdhR 2204687..2205454 (-) 768 WP_005462576.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -
  GPY39_RS11125 ampD 2205860..2206411 (-) 552 WP_005462574.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY39_RS11130 nadC 2206504..2207391 (+) 888 WP_021450015.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY39_RS11135 pilA 2207655..2208119 (+) 465 WP_021450016.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  GPY39_RS11140 pilB 2208119..2209804 (+) 1686 WP_021450017.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY39_RS11145 pilC 2209828..2211051 (+) 1224 WP_005479682.1 type II secretion system F family protein Machinery gene
  GPY39_RS11150 pilD 2211116..2211985 (+) 870 WP_021450018.1 A24 family peptidase Machinery gene
  GPY39_RS11155 coaE 2211986..2212600 (+) 615 WP_021450019.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15734.80 Da        Isoelectric Point: 4.1438

>NTDB_id=355634 GPY39_RS11135 WP_021450016.1 2207655..2208119(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1181]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAFAIPAYSDYTQRTRVAGAAAGISGFKTAVAMCAQDLGQLTGCDQATNDIPA
TIATGNDGATISYVDAVTVADGVITMVTTGVDDAGTLLELEFTPTIGNGVVQWDIAGTGCSDTTPGRGIDCSGN

Nucleotide


Download         Length: 465 bp        

>NTDB_id=355634 GPY39_RS11135 WP_021450016.1 2207655..2208119(+) (pilA) [Vibrio parahaemolyticus strain 2013V-1181]
ATGAAACACAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTCGTGGCGATTATCGGGGTATT
ATCTGCTTTTGCTATCCCAGCATACTCAGACTACACACAACGTACGCGAGTAGCCGGAGCCGCGGCTGGTATTAGCGGTT
TCAAAACAGCAGTTGCAATGTGCGCACAGGATCTTGGCCAGCTTACAGGCTGCGACCAAGCTACTAATGATATTCCAGCA
ACAATCGCTACTGGTAATGACGGCGCGACTATTTCATATGTAGATGCGGTTACCGTCGCTGACGGCGTTATTACAATGGT
AACTACAGGTGTTGATGATGCAGGTACTTTACTAGAACTTGAGTTTACTCCAACTATTGGCAACGGTGTCGTTCAGTGGG
ATATTGCCGGTACAGGATGTAGCGACACTACTCCTGGCCGCGGCATTGACTGTTCAGGTAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

43.284

87.013

0.377
  pilA2 Legionella pneumophila strain ERS1305867

43.609

86.364

0.377
  pilA Vibrio parahaemolyticus RIMD 2210633

47.899

77.273

0.37
  comP Acinetobacter baylyi ADP1

36.601

99.351

0.364

Multiple sequence alignment