Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CTCNB1_RS01045 Genome accession   NC_013446
Coordinates   240843..242381 (+) Length   512 a.a.
NCBI ID   WP_012836693.1    Uniprot ID   -
Organism   Comamonas thiooxydans     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 235843..247381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTCNB1_RS01025 (CtCNB1_0205) - 236571..237899 (-) 1329 WP_012836689.1 sulfatase family protein -
  CTCNB1_RS01030 (CtCNB1_0206) - 238013..239005 (-) 993 WP_012836690.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  CTCNB1_RS01035 (CtCNB1_0207) - 239146..240117 (-) 972 WP_012836691.1 tripartite tricarboxylate transporter substrate binding protein -
  CTCNB1_RS01040 (CtCNB1_0208) - 240210..240758 (+) 549 WP_012836692.1 MarR family winged helix-turn-helix transcriptional regulator -
  CTCNB1_RS01045 (CtCNB1_0209) comM 240843..242381 (+) 1539 WP_012836693.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CTCNB1_RS01050 (CtCNB1_0210) - 242395..243324 (-) 930 WP_012836694.1 LysR substrate-binding domain-containing protein -
  CTCNB1_RS01055 (CtCNB1_0211) - 243436..244614 (+) 1179 WP_012836695.1 YbfB/YjiJ family MFS transporter -
  CTCNB1_RS01060 (CtCNB1_0212) - 244649..245716 (+) 1068 WP_041743868.1 NAD(P)H-dependent flavin oxidoreductase -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54741.65 Da        Isoelectric Point: 7.3752

>NTDB_id=35553 CTCNB1_RS01045 WP_012836693.1 240843..242381(+) (comM) [Comamonas thiooxydans]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDARRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDATLSEHGDGVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGFWGSRARACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDAITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=35553 CTCNB1_RS01045 WP_012836693.1 240843..242381(+) (comM) [Comamonas thiooxydans]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCACTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACCCTGGTGGGTCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCAGCCATCG
TCAATGCAGGGCTGGAGTTCCCGAACAACCAGCGCATCACGGTCAATCTGGCTCCGGCGGATCTGCCCAAGGACTCAGGC
CGCTTTGACCTGCCGATAGCGCTGGGCATTCTGGCGGCCAGCGGGCAGATCGATGCACGGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCGCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACTGCGCTGGCCCTGCAGCGTCAGC
AACAGCGCGTGCGGCTGGTGCTGCCGCCGGACAGTGCGCTGGAGGCCGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGACAGTTCATCGCGCATGACGCCACCCTGTCGGAGCATGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCTTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCACATGGTGTGCTGATGATCGGCCCTCCGGGCTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCGGGCATGACCGATGAGGAAGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGTCAGCGGCCGTTTGCCGCTCCCCATCACACGGCCAGTTCCATCGCCTTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAAATCTCCTATGCCCATTGCGGTGCGCTTTTCCTGGATGAGCTGCCCGAGTTCGCG
CGCAGCGCTCTGGAAGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTCCAGCTGGTGGCAGCCATGAACCCCTGTCCCTGCGGCTTCTGGGGGTCGCGTGCCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCCCGCTATCAGGCACGCATCAGCGGTCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGTTGCTGGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGGGCACAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCCTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATGCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
CGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.137

99.609

0.529
  comM Vibrio campbellii strain DS40M4

51.176

99.609

0.51
  comM Haemophilus influenzae Rd KW20

50.984

99.219

0.506
  comM Glaesserella parasuis strain SC1401

49.02

99.609

0.488
  comM Legionella pneumophila str. Paris

47.308

100

0.48
  comM Legionella pneumophila strain ERS1305867

47.308

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.725

99.609

0.436

Multiple sequence alignment