Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D11S_RS09935 | Genome accession | NC_013416 |
| Coordinates | 1990165..1990617 (+) | Length | 150 a.a. |
| NCBI ID | WP_005586498.1 | Uniprot ID | - |
| Organism | Aggregatibacter actinomycetemcomitans D11S-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1985165..1995617
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D11S_RS09920 (D11S_2066) | pnp | 1986122..1988251 (-) | 2130 | WP_032997542.1 | polyribonucleotide nucleotidyltransferase | - |
| D11S_RS09925 (D11S_2067) | nanQ | 1988545..1989015 (+) | 471 | WP_005547536.1 | N-acetylneuraminate anomerase | - |
| D11S_RS09930 (D11S_2069) | ampD | 1989489..1990043 (-) | 555 | WP_005567973.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| D11S_RS09935 (D11S_2070) | pilA | 1990165..1990617 (+) | 453 | WP_005586498.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D11S_RS09940 (D11S_2071) | pilB | 1990644..1992053 (+) | 1410 | WP_012821127.1 | GspE/PulE family protein | Machinery gene |
| D11S_RS09945 (D11S_2072) | pilC | 1992046..1993269 (+) | 1224 | WP_012821128.1 | type II secretion system F family protein | Machinery gene |
| D11S_RS09950 (D11S_2073) | - | 1993266..1993955 (+) | 690 | WP_005547547.1 | prepilin peptidase | - |
| D11S_RS09955 (D11S_2074) | coaE | 1994005..1994628 (+) | 624 | WP_005547548.1 | dephospho-CoA kinase | - |
| D11S_RS09960 (D11S_2075) | yacG | 1994618..1994830 (+) | 213 | WP_005547550.1 | DNA gyrase inhibitor YacG | - |
| D11S_RS09965 (D11S_2076) | - | 1994830..1995102 (+) | 273 | WP_005547552.1 | GNAT family N-acetyltransferase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15547.96 Da Isoelectric Point: 9.1384
>NTDB_id=35488 D11S_RS09935 WP_005586498.1 1990165..1990617(+) (pilA) [Aggregatibacter actinomycetemcomitans D11S-1]
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS
MKIQSAFISLKFVKKGFTLIELMIVIAIVAILATVAVPSYQNYTKKAAVSELLQASAPLRSEVELCIYNTGKAENCSGGQ
NGIQADVADASKQKYVKSTAVKGGVITVTGKGSLDKISYTLTASGTAASGVSWNAACGNNADIFPAGFCS
Nucleotide
Download Length: 453 bp
>NTDB_id=35488 D11S_RS09935 WP_005586498.1 1990165..1990617(+) (pilA) [Aggregatibacter actinomycetemcomitans D11S-1]
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA
ATGAAAATTCAATCCGCGTTTATTTCGCTAAAATTCGTTAAAAAAGGGTTTACATTAATCGAATTAATGATCGTCATCGC
TATTGTTGCTATTCTCGCCACCGTAGCCGTACCATCTTATCAAAATTACACTAAAAAAGCGGCGGTTTCCGAATTATTAC
AAGCCTCCGCCCCATTACGTTCCGAAGTGGAACTCTGTATTTATAACACCGGTAAGGCTGAAAATTGTAGCGGCGGACAA
AACGGCATTCAAGCAGATGTTGCAGATGCTTCGAAACAAAAATATGTGAAATCCACTGCGGTCAAAGGCGGCGTCATCAC
CGTTACCGGCAAAGGCAGTTTGGATAAAATCAGCTACACCCTTACCGCTTCGGGCACGGCTGCCAGCGGGGTCAGCTGGA
ACGCCGCCTGCGGCAATAATGCCGACATTTTCCCGGCAGGTTTCTGTTCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
62.319 |
92 |
0.573 |
| pilA | Haemophilus influenzae Rd KW20 |
59.028 |
96 |
0.567 |
| pilA | Glaesserella parasuis strain SC1401 |
53.846 |
95.333 |
0.513 |