Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBI04_RS10620 Genome accession   NZ_CP038452
Coordinates   2009628..2011112 (-) Length   494 a.a.
NCBI ID   WP_135257426.1    Uniprot ID   -
Organism   Thermus caldilimi strain YIM 78456     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2004628..2016112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBI04_RS10590 - 2004663..2006198 (+) 1536 WP_135257421.1 carboxypeptidase M32 -
  EBI04_RS10595 - 2006186..2007262 (-) 1077 WP_135257422.1 YbfB/YjiJ family MFS transporter -
  EBI04_RS10600 - 2007252..2008004 (-) 753 WP_135257423.1 ABC transporter permease -
  EBI04_RS10605 - 2007997..2008902 (-) 906 WP_135257424.1 ABC transporter ATP-binding protein -
  EBI04_RS10610 - 2008904..2009242 (-) 339 WP_240695286.1 nucleotide pyrophosphohydrolase -
  EBI04_RS10615 mgsA 2009254..2009631 (+) 378 WP_135257425.1 methylglyoxal synthase -
  EBI04_RS10620 comM 2009628..2011112 (-) 1485 WP_135257426.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EBI04_RS10625 - 2011122..2012258 (-) 1137 WP_135257427.1 nitrate/nitrite transporter -
  EBI04_RS10630 - 2012260..2013069 (-) 810 WP_135257428.1 EamA family transporter -
  EBI04_RS10635 - 2013066..2013953 (-) 888 WP_135257429.1 DMT family transporter -
  EBI04_RS10640 - 2014059..2015186 (+) 1128 WP_135257430.1 NAD(P) transhydrogenase subunit alpha -
  EBI04_RS10645 - 2015186..2015488 (+) 303 WP_135257942.1 proton-translocating transhydrogenase family protein -

Sequence

Protein


Download         Length: 494 a.a.        Molecular weight: 52829.18 Da        Isoelectric Point: 7.5080

>NTDB_id=354487 EBI04_RS10620 WP_135257426.1 2009628..2011112(-) (comM) [Thermus caldilimi strain YIM 78456]
MLAQVRSYALFGLDAVPVTVEVDVSPGLPSYALVGLPDKAVEESRERVRAALKNAGFPYPQARVVVNLAPAELRKEGSHF
DLPIALGLLAAQGVVPLEALSGLAVAGELGLDGSLRPVPGAVNLALGALVEGKRLLLPLESAKEAALVEGVEVYGVETLL
QAVAYLRGEEEPRRVEPDDPVALLEVLDLRDVKGQAKAKRALEIAAAGYHHLLMVGSPGSGKTMLARRLPFLLPPLSQEA
ALEVSRIHSAAGQALKGLLRTPPFRAPHHTVSYAGLIGGGAIPKPGEVSLAHRGVLFLDEFPEFSRDALEALRQPLEDGV
VTVSRARASLTFPAHFLLVAAMNPCPCGWYGDPERACTCTPASRGRYMGKISGPLLDRFDLVVEVPRLTPAELARAPEGE
STLAVRERVLKARERMLARQGRPNGELAGKALREHVCLTSGAEHLLQAAAKRMLLSARSYDRLLRVARTIADLQGAESVE
ENHVAEALAYRKTL

Nucleotide


Download         Length: 1485 bp        

>NTDB_id=354487 EBI04_RS10620 WP_135257426.1 2009628..2011112(-) (comM) [Thermus caldilimi strain YIM 78456]
ATGCTAGCCCAGGTCAGAAGCTACGCCCTCTTCGGCCTGGACGCGGTTCCCGTCACCGTGGAGGTGGACGTCAGTCCTGG
GCTTCCCAGCTACGCCCTGGTGGGCCTGCCGGATAAGGCGGTGGAGGAAAGCCGGGAAAGGGTGCGGGCCGCCCTCAAGA
ACGCGGGCTTCCCCTACCCCCAGGCGCGGGTGGTGGTGAACCTGGCCCCGGCGGAGCTCAGGAAGGAGGGGAGCCACTTC
GACCTGCCCATCGCCCTAGGGCTTCTTGCGGCCCAAGGGGTGGTGCCCCTCGAGGCCCTCTCCGGCTTGGCCGTGGCCGG
GGAGCTGGGCCTGGACGGGAGCCTGCGCCCGGTGCCAGGGGCGGTGAACCTGGCCCTGGGCGCTTTGGTGGAGGGGAAAA
GGCTCCTCCTGCCCTTAGAAAGCGCCAAGGAGGCCGCTTTGGTGGAGGGGGTGGAGGTCTACGGGGTGGAAACCCTCCTT
CAGGCGGTGGCTTACCTGAGGGGAGAAGAGGAGCCCAGGAGGGTGGAACCCGACGATCCCGTGGCCCTCCTCGAGGTCCT
GGACCTCCGGGACGTGAAGGGCCAGGCCAAGGCCAAGCGCGCCTTAGAGATCGCCGCCGCCGGTTACCACCACCTCCTCA
TGGTGGGAAGCCCGGGCTCGGGAAAGACCATGCTGGCGAGGCGCCTCCCTTTTCTCCTACCCCCCCTCTCCCAGGAGGCG
GCCCTGGAGGTGAGCCGCATCCACTCCGCCGCCGGGCAGGCCCTGAAGGGCCTCCTCCGCACCCCCCCTTTCCGCGCCCC
CCACCACACGGTGAGCTACGCGGGCCTCATCGGGGGCGGGGCCATCCCCAAGCCGGGGGAGGTCTCCCTGGCCCACCGGG
GGGTGCTCTTCCTGGACGAGTTCCCCGAGTTTTCCCGGGACGCCTTAGAAGCCCTCCGCCAGCCCCTCGAGGACGGGGTG
GTGACCGTCTCCCGGGCCCGGGCCAGCCTCACCTTCCCCGCCCACTTCCTCCTGGTGGCGGCCATGAACCCCTGCCCCTG
CGGCTGGTACGGGGACCCCGAAAGGGCCTGCACCTGCACCCCGGCAAGCCGCGGGCGCTACATGGGGAAGATCTCTGGGC
CCCTCCTGGACCGGTTTGACCTGGTGGTGGAGGTGCCCCGCCTTACCCCCGCTGAGCTCGCCCGCGCCCCCGAGGGGGAA
AGCACCCTGGCGGTGCGGGAACGGGTCCTTAAGGCCCGGGAGAGGATGCTGGCCCGCCAGGGGAGGCCCAACGGGGAGCT
TGCGGGAAAGGCCCTAAGGGAGCACGTGTGCTTAACCTCTGGGGCGGAACACCTTCTCCAGGCAGCGGCCAAGCGGATGC
TCCTTTCCGCCAGGAGCTACGACCGCCTCCTCCGGGTGGCCCGCACCATCGCTGACCTGCAGGGAGCGGAGAGCGTGGAG
GAAAACCACGTGGCCGAGGCCTTGGCCTACCGCAAAACCCTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.485

100

0.486
  comM Haemophilus influenzae Rd KW20

47.39

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.032

100

0.47
  comM Glaesserella parasuis strain SC1401

45.908

100

0.466
  comM Legionella pneumophila str. Paris

45.892

100

0.464
  comM Legionella pneumophila strain ERS1305867

45.892

100

0.464
  comM Vibrio campbellii strain DS40M4

45.749

100

0.457

Multiple sequence alignment