Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E4T63_RS27385 Genome accession   NZ_CP038438
Coordinates   5900512..5902005 (+) Length   497 a.a.
NCBI ID   WP_135296825.1    Uniprot ID   A0AAP8Z534
Organism   Pseudomonas fluorescens strain LBUM677     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5895512..5907005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T63_RS27360 (E4T63_27360) sutA 5896290..5896616 (-) 327 WP_003229413.1 transcriptional regulator SutA -
  E4T63_RS27365 (E4T63_27365) - 5896719..5897144 (-) 426 WP_003229414.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  E4T63_RS27370 (E4T63_27370) - 5897361..5898698 (-) 1338 WP_025113244.1 ammonium transporter -
  E4T63_RS27375 (E4T63_27375) glnK 5898736..5899074 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  E4T63_RS27380 (E4T63_27380) - 5899488..5899748 (+) 261 WP_007920416.1 accessory factor UbiK family protein -
  E4T63_RS27385 (E4T63_27385) comM 5900512..5902005 (+) 1494 WP_135296825.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E4T63_RS27390 (E4T63_27390) - 5902002..5903216 (-) 1215 WP_135296826.1 aldose 1-epimerase family protein -
  E4T63_RS27395 (E4T63_27395) - 5903436..5905412 (-) 1977 WP_027610434.1 methyl-accepting chemotaxis protein -
  E4T63_RS27400 (E4T63_27400) - 5905594..5906514 (-) 921 WP_047596753.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52984.18 Da        Isoelectric Point: 8.0086

>NTDB_id=354300 E4T63_RS27385 WP_135296825.1 5900512..5902005(+) (comM) [Pseudomonas fluorescens strain LBUM677]
MSLSIVHSRAQVGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDMAIALGILSASVQVPCLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRALVVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQMAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLSE
CEALEVAAIQSVASGVPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAAAVVAEARERQQKRQRCANAFLDLPGLKRHCQLSTADEKWLESACERLTLSLRSAHRLLKVARTLADLEQVDA
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=354300 E4T63_RS27385 WP_135296825.1 5900512..5902005(+) (comM) [Pseudomonas fluorescens strain LBUM677]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGGTTGGCGTGGATGCTCCCGCTGTCACCGTCGAAGTCCATCTCGCCAA
CGGTCTGCCCTCGCTGACCATGGTCGGCCTGCCTGAAGCGGCGGTAAAGGAGAGCAAGGATCGCGTGCGCAGCGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACCTTGAATCTGGCGCCGGCGGACTTGCCCAAGGATGGCGGGCGC
TTTGATATGGCGATTGCCCTGGGGATTCTGTCGGCGAGTGTGCAGGTGCCGTGTCTGACGCTGGATGATGTGGAATGCCT
TGGTGAACTGGCGTTGTCCGGCGCTGTGCGGCCGGTACGCGGGGTGTTGCCGGCGGCACTGGCGGCGCGCAAGGCCGGGC
GGGCACTGGTGGTGCCGCGGGCGAATGCCGAGGAAGCGTGCCTTGCTTCGGGTTTGAAGGTGTTTGCGGTGGATCATCTG
CTGGAGGCAGTGGCGCATTTCAACGGGCATACGCCGGTCGAGCCTTATGTCTCGGACGGGCTGATCCATGCGGCGAAACC
TTATCCCGACCTCAATGAGGTGCAAGGACAGATGGCCGCGAAACGGGCGCTGCTGATCGCGGCGGCGGGCGCACACAACC
TGTTGTTCAGCGGGCCGCCGGGGACCGGCAAGACCTTGTTGGCAAGTCGCTTGCCGGGCCTGCTGCCGCCACTCTCCGAA
TGCGAGGCGCTGGAAGTGGCGGCGATTCAATCGGTCGCCAGCGGCGTGCCACTGACCCATTGGCCGCAGCGACCATTCCG
TCAACCGCACCATTCTGCATCGGGGCCGGCGCTGGTCGGTGGCAGCTCGAAACCGCAACCCGGCGAGATCACCCTCGCCC
ACCACGGTGTGCTGTTTCTCGACGAGCTTCCGGAATTTGATCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAATCC
GGGCATATCGTGATTGCCCGAGCCAAGGATCGCGTACGCTTTCCCGCGCGTTTCCAGTTGGTGGCGGCAATGAATCCTTG
CCCCTGTGGATATCTTGGCGAGCCGAGCGGCAAGTGCTCTTGTACACCGGACATGGTGCAGCGCTACCGCAACAAGCTAT
CGGGGCCGTTGCTGGATCGGATCGATCTGCACCTGACGGTGGCGCGGGAAGCGACGGCGTTGAATCCGGCAGTGAAGCCA
GGCGAGGACAGCGCCAGTGCGGCAGCCGTGGTGGCCGAGGCACGCGAACGCCAGCAAAAGCGTCAGCGTTGTGCCAATGC
GTTCCTCGATCTGCCAGGCCTGAAGCGGCACTGCCAGTTATCCACAGCCGATGAGAAATGGCTGGAGTCAGCCTGCGAAC
GGCTGACCTTGTCACTGCGCTCAGCCCATCGTTTGCTCAAGGTCGCCAGAACCCTGGCAGACCTTGAGCAAGTCGATGCA
ATCAGCCGTGAGCATCTGGCCGAGGCGCTGCAATACCGGCCGGCGACGCCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.141

99.598

0.539
  comM Vibrio cholerae strain A1552

54.141

99.598

0.539
  comM Haemophilus influenzae Rd KW20

52.505

100

0.527
  comM Glaesserella parasuis strain SC1401

51.8

100

0.521
  comM Legionella pneumophila str. Paris

50.2

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.2

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.89

100

0.451

Multiple sequence alignment