Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   E4T21_RS00240 Genome accession   NZ_CP038437
Coordinates   51284..52789 (-) Length   501 a.a.
NCBI ID   WP_149282450.1    Uniprot ID   A0A5C1N9T1
Organism   Halomonas binhaiensis strain Y2R2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 46284..57789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4T21_RS00210 (E4T21_00210) - 46436..47977 (+) 1542 WP_149282437.1 bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein -
  E4T21_RS00215 (E4T21_00215) - 48047..48316 (-) 270 WP_149282440.1 hypothetical protein -
  E4T21_RS00220 (E4T21_00220) ribA 48613..49248 (-) 636 WP_149282442.1 GTP cyclohydrolase II -
  E4T21_RS00225 (E4T21_00225) hemE 49395..50471 (+) 1077 WP_149282444.1 uroporphyrinogen decarboxylase -
  E4T21_RS00230 (E4T21_00230) - 50491..50862 (+) 372 WP_149282446.1 VanZ family protein -
  E4T21_RS00235 (E4T21_00235) - 50867..51268 (+) 402 WP_149282448.1 VOC family protein -
  E4T21_RS00240 (E4T21_00240) comM 51284..52789 (-) 1506 WP_149282450.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  E4T21_RS00245 (E4T21_00245) - 52885..53199 (-) 315 WP_149282453.1 accessory factor UbiK family protein -
  E4T21_RS00250 (E4T21_00250) - 53607..53945 (+) 339 WP_149282455.1 P-II family nitrogen regulator -
  E4T21_RS00255 (E4T21_00255) - 53997..55247 (+) 1251 WP_149282457.1 ammonium transporter -
  E4T21_RS00260 (E4T21_00260) glnK 55457..55795 (+) 339 WP_149282460.1 P-II family nitrogen regulator -
  E4T21_RS00265 (E4T21_00265) - 55925..56158 (-) 234 WP_149282462.1 DUF3820 family protein -
  E4T21_RS00270 (E4T21_00270) - 56260..56562 (-) 303 WP_149282464.1 putative quinol monooxygenase -
  E4T21_RS00275 (E4T21_00275) - 56671..57075 (+) 405 WP_149282465.1 VOC family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 53979.00 Da        Isoelectric Point: 7.6032

>NTDB_id=354261 E4T21_RS00240 WP_149282450.1 51284..52789(-) (comM) [Halomonas binhaiensis strain Y2R2]
MTLAVISTRAGLGLDAPEVQVEVHLANGLPGMTLVGLPETAVKESRERVRSALTTSGFDFPLRRITLNLAPADLPKEGGR
FDLPIALGLLVASGQLPNEALNGLECVGELALDGHLRPVTGILPFALATRRAGKRLIVPVDNADEASLVDGLEILPARHL
LEVVAHLNGQSLIPSHVFHGAGTPQAETLDLADVRGQHQARRALEIAAAGGHNLLFAGPPGTGKTLLASRLPGILPPLSK
DEALEVAAVRSVTGLPLEQDWGRRPFRAPHHTASAVALVGGGGKPRPGEISLAHLGVLFLDELPEFSRHVLEVMREPMES
GEIHIARASHERRYPARFQLVAAMNPCPCGHLGDPRQSCVCTAAQIQRYQSRLSAPLLDRIDLQVEVPAIPAAQLTSTQQ
GESSHTVRQRVQAARERQQERGGLNAQLSGRALDDACGLKAEDRAWLAESLERLKLSARAYHRILRVALTLADLSELKYP
GREQLIEAIGYRQLDRMLKRG

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=354261 E4T21_RS00240 WP_149282450.1 51284..52789(-) (comM) [Halomonas binhaiensis strain Y2R2]
ATGACGCTAGCCGTTATCTCGACGCGGGCGGGCTTGGGGCTGGATGCCCCTGAAGTACAGGTGGAAGTACATCTGGCCAA
CGGACTACCCGGTATGACCTTGGTAGGACTGCCCGAAACAGCAGTAAAGGAAAGCCGGGAAAGAGTACGCAGCGCGCTGA
CTACTTCTGGTTTCGATTTTCCATTGCGCCGAATCACTCTCAACCTGGCGCCCGCGGATCTGCCCAAGGAAGGGGGACGT
TTTGATTTACCCATCGCCCTGGGTCTACTGGTAGCCTCCGGCCAGCTCCCCAATGAAGCGCTAAATGGCCTGGAATGTGT
TGGTGAGTTGGCCCTGGATGGCCACCTGCGTCCTGTTACAGGCATTCTTCCTTTTGCACTTGCCACCCGCCGAGCCGGCA
AACGCTTGATTGTTCCAGTGGATAACGCTGACGAAGCCTCCCTCGTCGATGGATTGGAGATACTGCCAGCCCGACACCTG
CTGGAGGTCGTGGCACATCTCAATGGCCAGTCCCTCATTCCTTCGCATGTTTTTCACGGTGCAGGAACGCCCCAGGCCGA
AACACTAGACCTGGCCGATGTCCGCGGCCAGCACCAGGCTCGTCGAGCACTGGAAATAGCGGCAGCAGGAGGCCATAACC
TGTTGTTTGCCGGCCCCCCCGGTACTGGCAAGACCCTGCTGGCCAGCCGCTTGCCAGGCATTCTTCCGCCCCTGAGCAAG
GACGAGGCCCTGGAAGTGGCTGCCGTTCGCTCTGTGACAGGATTGCCTCTGGAACAGGACTGGGGACGGCGCCCCTTTCG
TGCTCCGCACCATACAGCCAGCGCCGTGGCGCTGGTAGGGGGCGGTGGAAAGCCCCGTCCAGGGGAGATTTCCCTGGCCC
ATTTGGGCGTGCTGTTTCTAGATGAGCTGCCGGAGTTCAGCCGCCATGTGCTGGAAGTCATGCGCGAGCCGATGGAGTCC
GGCGAAATTCATATTGCCCGCGCCAGCCATGAGCGTCGCTATCCAGCACGTTTCCAGCTGGTAGCCGCGATGAACCCCTG
CCCTTGTGGGCATCTTGGCGATCCGCGCCAGTCATGTGTCTGCACCGCCGCACAAATCCAGCGTTACCAGTCACGCCTTT
CGGCTCCCTTGCTGGACCGTATTGACCTGCAGGTAGAGGTGCCCGCCATTCCTGCAGCACAACTGACATCGACACAGCAA
GGAGAGTCATCGCATACAGTGCGCCAGCGTGTGCAAGCGGCCCGAGAGCGACAACAGGAACGCGGAGGGCTCAATGCTCA
GCTCTCCGGCCGAGCGCTAGATGATGCCTGCGGCCTGAAAGCCGAAGATCGTGCATGGCTGGCCGAAAGCCTGGAACGCC
TGAAGCTCTCGGCCCGTGCTTACCATCGAATATTGCGTGTTGCCCTGACCCTGGCAGACCTTTCCGAGCTCAAGTATCCG
GGCCGCGAACAACTGATCGAAGCTATCGGCTACCGCCAATTGGACCGGATGCTGAAGCGAGGATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1N9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.851

100

0.553
  comM Vibrio campbellii strain DS40M4

54.134

100

0.549
  comM Haemophilus influenzae Rd KW20

52.663

100

0.533
  comM Glaesserella parasuis strain SC1401

52.465

100

0.531
  comM Legionella pneumophila str. Paris

49.9

100

0.499
  comM Legionella pneumophila strain ERS1305867

49.9

100

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.894

99.601

0.467

Multiple sequence alignment