Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GPA00_RS02605 Genome accession   NZ_CP046629
Coordinates   529352..529945 (-) Length   197 a.a.
NCBI ID   WP_024344431.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 524352..534945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02585 (GPA00_02585) recA 524863..526017 (-) 1155 WP_004233517.1 recombinase RecA Machinery gene
  GPA00_RS02590 (GPA00_02590) cinA 526067..527326 (-) 1260 WP_157327439.1 competence/damage-inducible protein A Machinery gene
  GPA00_RS02595 (GPA00_02595) - 527440..528552 (-) 1113 WP_232524226.1 MFS transporter -
  GPA00_RS02600 (GPA00_02600) - 528765..529322 (-) 558 WP_198362632.1 DNA-3-methyladenine glycosylase I -
  GPA00_RS02605 (GPA00_02605) ruvA 529352..529945 (-) 594 WP_024344431.1 Holliday junction branch migration protein RuvA Machinery gene
  GPA00_RS02610 (GPA00_02610) hexB 529946..531889 (-) 1944 WP_157327446.1 DNA mismatch repair endonuclease MutL Machinery gene
  GPA00_RS02615 (GPA00_02615) hexA 532003..534573 (-) 2571 WP_074450865.1 DNA mismatch repair protein MutS Machinery gene
  GPA00_RS02620 (GPA00_02620) - 534560..534913 (-) 354 WP_027968295.1 YlbF family regulator -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21727.16 Da        Isoelectric Point: 5.0719

>NTDB_id=354066 GPA00_RS02605 WP_024344431.1 529352..529945(-) (ruvA) [Streptococcus equinus strain CNU G6]
MYDYIKGKLTKITAKYIVVEAGGLGYIINVANPYSFSDLMNQDVQIYLHQVVREDAQLLFGFHTEDEKAVFLNLISVSGI
GPTTALAIIAVDDNEGLVTAIDNSDIRYLMKFPKIGKKTAQQMVLDLAGKFADVSMENGLASQAKAVANEQLEEAMEALL
ALGYKAAELKKIRKFFEGTNETAEQYIKSSLKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=354066 GPA00_RS02605 WP_024344431.1 529352..529945(-) (ruvA) [Streptococcus equinus strain CNU G6]
ATGTACGATTATATCAAAGGAAAATTAACTAAAATTACTGCAAAATATATTGTCGTTGAAGCTGGAGGATTAGGTTACAT
TATCAACGTTGCCAATCCATATAGTTTTTCTGACTTGATGAATCAAGATGTTCAAATCTACCTTCATCAAGTTGTTCGAG
AAGATGCACAGCTTTTGTTTGGCTTTCATACAGAAGATGAAAAAGCAGTCTTTCTTAACCTTATTTCAGTTTCTGGAATT
GGTCCGACAACAGCGCTAGCGATTATCGCAGTGGATGATAATGAAGGTCTCGTAACTGCTATTGACAATAGTGATATTCG
TTATCTGATGAAATTTCCAAAAATCGGTAAAAAAACAGCTCAACAAATGGTGCTTGATTTAGCTGGTAAGTTTGCTGATG
TTTCTATGGAAAATGGCTTAGCTTCTCAGGCAAAAGCAGTGGCAAACGAACAGCTTGAAGAGGCCATGGAAGCTCTTTTG
GCACTTGGCTACAAGGCAGCAGAACTTAAGAAAATTCGTAAGTTCTTTGAAGGTACAAATGAAACCGCAGAACAATACAT
CAAATCAAGCCTTAAGATGTTGATGAAGGGCTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

68.687

100

0.69
  ruvA Streptococcus pneumoniae D39

68.687

100

0.69
  ruvA Streptococcus pneumoniae TIGR4

68.687

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.365

100

0.437