Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   GPA00_RS02615 Genome accession   NZ_CP046629
Coordinates   532003..534573 (-) Length   856 a.a.
NCBI ID   WP_074450865.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 527003..539573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS02595 (GPA00_02595) - 527440..528552 (-) 1113 WP_232524226.1 MFS transporter -
  GPA00_RS02600 (GPA00_02600) - 528765..529322 (-) 558 WP_198362632.1 DNA-3-methyladenine glycosylase I -
  GPA00_RS02605 (GPA00_02605) ruvA 529352..529945 (-) 594 WP_024344431.1 Holliday junction branch migration protein RuvA Machinery gene
  GPA00_RS02610 (GPA00_02610) hexB 529946..531889 (-) 1944 WP_157327446.1 DNA mismatch repair endonuclease MutL Machinery gene
  GPA00_RS02615 (GPA00_02615) hexA 532003..534573 (-) 2571 WP_074450865.1 DNA mismatch repair protein MutS Machinery gene
  GPA00_RS02620 (GPA00_02620) - 534560..534913 (-) 354 WP_027968295.1 YlbF family regulator -
  GPA00_RS02625 (GPA00_02625) argR 534910..535347 (-) 438 WP_021143308.1 arginine repressor -
  GPA00_RS02630 (GPA00_02630) argS 535537..537228 (+) 1692 WP_157327448.1 arginine--tRNA ligase -
  GPA00_RS02635 (GPA00_02635) - 537374..538798 (-) 1425 Protein_523 PTS transporter subunit EIIC -

Sequence


Protein


Download         Length: 856 a.a.        Molecular weight: 96002.26 Da        Isoelectric Point: 4.8397

>NTDB_id=354068 GPA00_RS02615 WP_074450865.1 532003..534573(-) (hexA) [Streptococcus equinus strain CNU G6]
MAKDKISPGMQQYLDVKKDYPDAFLLFRMGDFYELFYDDAVKAAQILEISLTSRNKNAENPIPMAGVPYHSAQQYIDVLV
EMGYKVAIAEQMEDPKKAVGVVKREVVQVITPGTAVDSTKPDNANNFLVAIDSDGKTFGLAYMDVSTGEFYATSLSDFAS
LKSEILNLKAREIVVGYELSEEEKHSLVKQLNLLLSFEQERFEDVHLIDSNLASLEISAAEKLLQYVHTTQKRELSHLQK
LVHYEIKDYLQMSYTTKSSLDLLENARTSKKHGSLYWLLDETKTAMGMRLLRNWIDRPLVNREQIEERQNIIQVFLDNFF
ERSDLTDSLKGVYDIERLASRVSFGKANPKDLLQLGHTLGQVPTIKAILESFESPYLDKLVNSIDTLPELESLISSAIDP
DAQAVITEGSIIKTGFDETLDKYRKVMREGTSWIAEIEAKERAASGITNLKIDYNKKDGYYFHVTNSNLSLVPDYFFRKA
TLKNSERFGTAELAKIEGEMLEAREQSASLEYDIFMRVRAQVERYISRLQDLAKAISTVDVLQSLAVVAENNHYVRPTFN
DSHEIKIEKGRHAVVEKVMGTQEYIPNTITFGRNTNIQLITGPNMSGKSTYMRQLALTVIMAQMGSYVAAESVSLPVFDA
IFTRIGAADDLISGQSTFMVEMMEANQAIKRASDKSLILFDELGRGTATYDGMALAQSIIEYIHDHIGAKTMFATHYHEL
TALSTTLTHLVNVHVATLERNGDVTFLHKIAEGPADKSYGIHVAKIAGLPEDLLQRADSILTNLESGAAQLHLTPEVDSE
PVATESEVSEPVVEQLSLFAEDSSNQEVIEALKKVDLMNLTPMQAMNVIYELKNML

Nucleotide


Download         Length: 2571 bp        

>NTDB_id=354068 GPA00_RS02615 WP_074450865.1 532003..534573(-) (hexA) [Streptococcus equinus strain CNU G6]
ATGGCAAAAGATAAAATTTCTCCAGGCATGCAACAGTATTTGGATGTTAAAAAAGACTATCCAGATGCTTTTTTACTTTT
CCGCATGGGAGATTTTTACGAATTATTTTACGATGATGCAGTTAAGGCTGCACAGATTTTAGAGATTAGTTTGACTAGTC
GAAATAAAAACGCTGAAAATCCTATTCCAATGGCAGGGGTACCATATCACTCAGCTCAGCAATATATTGATGTCCTTGTT
GAAATGGGCTACAAAGTTGCGATTGCAGAACAAATGGAAGATCCCAAGAAAGCAGTCGGTGTTGTAAAACGTGAAGTTGT
TCAAGTCATTACGCCAGGTACGGCAGTTGATTCGACAAAACCTGACAATGCCAATAATTTCTTGGTGGCTATTGATTCTG
ATGGCAAGACTTTTGGTCTAGCTTACATGGATGTGTCGACAGGTGAGTTTTATGCGACAAGTCTGTCAGATTTTGCCAGT
CTTAAAAGTGAAATCCTAAACCTTAAAGCACGTGAGATTGTTGTTGGCTACGAACTTTCAGAAGAAGAAAAACACAGTCT
TGTTAAACAACTCAATTTGCTTTTATCGTTTGAACAAGAGCGTTTTGAAGATGTGCACTTGATTGATTCTAATTTGGCAT
CTTTGGAGATTTCAGCTGCTGAGAAATTACTACAGTACGTCCATACCACTCAAAAACGTGAGCTCAGCCATTTGCAAAAA
TTGGTTCACTATGAAATCAAAGATTATCTTCAAATGTCTTATACGACAAAATCAAGTCTTGATTTGTTAGAAAATGCACG
TACAAGCAAGAAACACGGTAGTCTTTATTGGTTGCTTGATGAGACAAAGACAGCTATGGGGATGCGTCTTTTGCGTAATT
GGATCGACCGTCCTTTGGTTAATCGAGAACAAATCGAAGAACGTCAAAATATCATTCAAGTTTTCTTAGACAATTTCTTT
GAGCGTAGTGATTTGACGGATAGTCTTAAGGGTGTTTATGATATTGAACGCTTGGCGAGTCGTGTGTCATTTGGTAAGGC
TAATCCAAAAGACCTTCTTCAACTTGGTCATACTTTGGGGCAAGTACCTACTATCAAGGCTATTTTGGAATCCTTTGAAA
GTCCATACCTTGACAAACTTGTCAACAGCATTGACACTCTTCCTGAGTTGGAATCATTGATTAGCTCTGCTATTGACCCA
GATGCTCAAGCTGTCATCACAGAAGGTAGCATCATTAAAACTGGTTTTGATGAGACTTTGGATAAATACCGCAAAGTCAT
GCGTGAAGGTACAAGCTGGATTGCTGAGATTGAAGCCAAAGAACGTGCCGCAAGTGGTATTACAAATCTAAAAATTGATT
ACAATAAAAAAGATGGCTATTATTTCCATGTCACAAATTCTAACCTTTCTTTGGTGCCAGATTATTTCTTCCGTAAAGCA
ACTTTGAAGAACTCAGAACGTTTTGGTACAGCAGAATTGGCTAAAATTGAAGGTGAAATGCTGGAAGCGCGTGAACAATC
AGCAAGCCTAGAATACGATATTTTCATGCGTGTTCGTGCGCAGGTTGAACGTTATATTTCTCGTTTGCAAGACTTAGCAA
AAGCTATTTCAACTGTCGATGTCTTACAAAGTTTAGCTGTGGTCGCGGAAAATAATCATTATGTGCGTCCAACTTTCAAC
GATAGCCATGAGATTAAGATTGAAAAAGGTCGCCATGCCGTTGTCGAAAAAGTCATGGGCACTCAAGAATATATTCCAAA
TACGATTACATTTGGTAGAAATACTAATATTCAGCTGATTACTGGTCCTAATATGAGTGGTAAGTCAACGTATATGCGTC
AGCTAGCATTGACTGTTATCATGGCACAAATGGGGTCTTATGTCGCTGCTGAAAGTGTCAGCCTACCAGTCTTCGATGCT
ATTTTCACACGTATTGGTGCAGCAGATGACTTGATTTCAGGTCAGTCAACCTTCATGGTAGAAATGATGGAAGCTAACCA
AGCTATTAAACGTGCTAGTGATAAGTCTTTGATTCTCTTTGATGAATTGGGACGTGGTACGGCTACCTATGATGGTATGG
CTTTGGCACAATCTATTATTGAGTATATTCATGACCATATTGGGGCTAAAACGATGTTTGCAACACACTATCATGAATTG
ACAGCTCTGTCAACGACGTTGACACACCTTGTCAACGTCCATGTTGCAACCCTTGAACGTAATGGTGATGTGACTTTCCT
TCACAAGATTGCAGAAGGACCAGCTGATAAATCCTATGGTATTCACGTTGCGAAAATTGCAGGTCTACCAGAAGACTTAT
TGCAGCGTGCAGACAGCATTTTAACCAACCTTGAATCAGGTGCTGCGCAGCTTCATTTGACACCAGAAGTTGACAGTGAA
CCAGTAGCAACTGAGTCAGAAGTTTCAGAACCTGTAGTGGAGCAATTAAGTCTTTTTGCAGAAGATTCTTCTAATCAAGA
AGTGATTGAAGCACTTAAGAAAGTTGATTTGATGAACTTGACACCTATGCAGGCTATGAATGTCATCTATGAATTGAAAA
ATATGTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

72.196

100

0.722

  mutS Pseudomonas stutzeri strain ATCC 17587

37.716

100

0.382


Multiple sequence alignment